Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SRP54P61011 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
SRP54P61011 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
SRP54P61011 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.98■■□□□ 1.75
SRP54P61011 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.98■■□□□ 1.75
SRP54P61011 HLA-V-202ENST00000446817 847 ntBASIC25.97■■□□□ 1.75
SRP54P61011 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SRP54P61011 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
SRP54P61011 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
SRP54P61011 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC25.96■■□□□ 1.75
SRP54P61011 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
SRP54P61011 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.96■■□□□ 1.75
SRP54P61011 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
SRP54P61011 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
SRP54P61011 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.95■■□□□ 1.74
SRP54P61011 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
SRP54P61011 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC25.94■■□□□ 1.74
SRP54P61011 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
SRP54P61011 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.93■■□□□ 1.74
SRP54P61011 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
SRP54P61011 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
SRP54P61011 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
SRP54P61011 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
SRP54P61011 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SRP54P61011 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC25.9■■□□□ 1.74
SRP54P61011 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.9■■□□□ 1.74
SRP54P61011 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SRP54P61011 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.89■■□□□ 1.73
SRP54P61011 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.88■■□□□ 1.73
SRP54P61011 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.88■■□□□ 1.73
SRP54P61011 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SRP54P61011 LINC01971-201ENST00000617888 1048 ntBASIC25.87■■□□□ 1.73
SRP54P61011 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.87■■□□□ 1.73
SRP54P61011 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.86■■□□□ 1.73
SRP54P61011 AC010864.1-201ENST00000609407 1511 ntBASIC25.86■■□□□ 1.73
SRP54P61011 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SRP54P61011 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.85■■□□□ 1.73
SRP54P61011 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.85■■□□□ 1.73
SRP54P61011 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
SRP54P61011 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.83■■□□□ 1.73
SRP54P61011 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.83■■□□□ 1.73
SRP54P61011 DUX4L11-201ENST00000611504 1267 ntBASIC25.83■■□□□ 1.73
SRP54P61011 DUX4L12-201ENST00000614593 1267 ntBASIC25.83■■□□□ 1.73
SRP54P61011 DUX4L14-201ENST00000621227 1267 ntBASIC25.83■■□□□ 1.73
SRP54P61011 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
SRP54P61011 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SRP54P61011 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SRP54P61011 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SRP54P61011 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SRP54P61011 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.81■■□□□ 1.72
SRP54P61011 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SRP54P61011 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SRP54P61011 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SRP54P61011 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SRP54P61011 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.79■■□□□ 1.72
SRP54P61011 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
SRP54P61011 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SRP54P61011 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SRP54P61011 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.78■■□□□ 1.72
SRP54P61011 MIR3648-2-201ENST00000581792 180 ntBASIC25.78■■□□□ 1.72
SRP54P61011 MIR3648-1-201ENST00000615959 180 ntBASIC25.78■■□□□ 1.72
SRP54P61011 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.77■■□□□ 1.72
SRP54P61011 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.76■■□□□ 1.71
SRP54P61011 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.76■■□□□ 1.71
SRP54P61011 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.76■■□□□ 1.71
SRP54P61011 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.76■■□□□ 1.71
SRP54P61011 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.76■■□□□ 1.71
SRP54P61011 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SRP54P61011 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC25.75■■□□□ 1.71
SRP54P61011 AC016575.1-201ENST00000607026 382 ntBASIC25.75■■□□□ 1.71
SRP54P61011 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.74■■□□□ 1.71
SRP54P61011 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
SRP54P61011 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SRP54P61011 MIR639-201ENST00000384974 98 ntBASIC25.73■■□□□ 1.71
SRP54P61011 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.73■■□□□ 1.71
SRP54P61011 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.72■■□□□ 1.71
SRP54P61011 CR559946.2-201ENST00000623684 991 ntBASIC25.72■■□□□ 1.71
SRP54P61011 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SRP54P61011 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
SRP54P61011 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SRP54P61011 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
SRP54P61011 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SRP54P61011 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SRP54P61011 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
SRP54P61011 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
SRP54P61011 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.68■■□□□ 1.7
SRP54P61011 AL135925.1-201ENST00000605920 1701 ntBASIC25.68■■□□□ 1.7
SRP54P61011 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SRP54P61011 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SRP54P61011 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SRP54P61011 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SRP54P61011 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
SRP54P61011 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
SRP54P61011 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.67■■□□□ 1.7
SRP54P61011 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SRP54P61011 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.66■■□□□ 1.7
SRP54P61011 DUX4L13-201ENST00000554103 1267 ntBASIC25.66■■□□□ 1.7
SRP54P61011 DUX4L15-201ENST00000611059 1267 ntBASIC25.66■■□□□ 1.7
SRP54P61011 DUX4L23-201ENST00000615195 1269 ntBASIC25.66■■□□□ 1.7
SRP54P61011 DUX4L24-201ENST00000617576 1269 ntBASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms