Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.02■■■□□ 2.56
ALDH1A1P00352 CHML-204ENST00000638121 920 ntTSL 2 BASIC31.01■■■□□ 2.55
ALDH1A1P00352 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31■■■□□ 2.55
ALDH1A1P00352 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31■■■□□ 2.55
ALDH1A1P00352 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
ALDH1A1P00352 RNF126P1-201ENST00000567452 1320 ntBASIC30.97■■■□□ 2.55
ALDH1A1P00352 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC30.96■■■□□ 2.55
ALDH1A1P00352 GPX1-201ENST00000419349 1106 ntBASIC30.96■■■□□ 2.55
ALDH1A1P00352 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
ALDH1A1P00352 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
ALDH1A1P00352 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.93■■■□□ 2.54
ALDH1A1P00352 EI24-212ENST00000615917 1407 ntTSL 2 BASIC30.93■■■□□ 2.54
ALDH1A1P00352 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
ALDH1A1P00352 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
ALDH1A1P00352 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.91■■■□□ 2.54
ALDH1A1P00352 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
ALDH1A1P00352 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
ALDH1A1P00352 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
ALDH1A1P00352 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.89■■■□□ 2.54
ALDH1A1P00352 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.89■■■□□ 2.54
ALDH1A1P00352 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.88■■■□□ 2.53
ALDH1A1P00352 TPT1-202ENST00000379055 948 ntTSL 2 BASIC30.88■■■□□ 2.53
ALDH1A1P00352 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
ALDH1A1P00352 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
ALDH1A1P00352 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC30.88■■■□□ 2.53
ALDH1A1P00352 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
ALDH1A1P00352 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
ALDH1A1P00352 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
ALDH1A1P00352 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
ALDH1A1P00352 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.85■■■□□ 2.53
ALDH1A1P00352 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
ALDH1A1P00352 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.84■■■□□ 2.53
ALDH1A1P00352 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
ALDH1A1P00352 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC30.83■■■□□ 2.53
ALDH1A1P00352 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
ALDH1A1P00352 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
ALDH1A1P00352 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
ALDH1A1P00352 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
ALDH1A1P00352 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
ALDH1A1P00352 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.77■■■□□ 2.52
ALDH1A1P00352 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC30.77■■■□□ 2.52
ALDH1A1P00352 AC012354.3-201ENST00000623734 483 ntBASIC30.77■■■□□ 2.52
ALDH1A1P00352 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
ALDH1A1P00352 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC30.76■■■□□ 2.51
ALDH1A1P00352 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC30.76■■■□□ 2.51
ALDH1A1P00352 NTF6A-201ENST00000591175 560 ntBASIC30.76■■■□□ 2.51
ALDH1A1P00352 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
ALDH1A1P00352 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.75■■■□□ 2.51
ALDH1A1P00352 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.75■■■□□ 2.51
ALDH1A1P00352 CEP120-209ENST00000515110 606 ntTSL 3 BASIC30.75■■■□□ 2.51
ALDH1A1P00352 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
ALDH1A1P00352 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
ALDH1A1P00352 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
ALDH1A1P00352 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
ALDH1A1P00352 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC30.74■■■□□ 2.51
ALDH1A1P00352 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC30.74■■■□□ 2.51
ALDH1A1P00352 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
ALDH1A1P00352 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
ALDH1A1P00352 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
ALDH1A1P00352 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
ALDH1A1P00352 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
ALDH1A1P00352 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.71■■■□□ 2.51
ALDH1A1P00352 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
ALDH1A1P00352 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.71■■■□□ 2.51
ALDH1A1P00352 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
ALDH1A1P00352 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
ALDH1A1P00352 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
ALDH1A1P00352 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
ALDH1A1P00352 HES4-202ENST00000428771 1040 ntTSL 2 BASIC30.66■■■□□ 2.5
ALDH1A1P00352 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
ALDH1A1P00352 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.63■■■□□ 2.49
ALDH1A1P00352 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.63■■■□□ 2.49
ALDH1A1P00352 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC30.63■■■□□ 2.49
ALDH1A1P00352 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.62■■■□□ 2.49
ALDH1A1P00352 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC30.62■■■□□ 2.49
ALDH1A1P00352 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.62■■■□□ 2.49
ALDH1A1P00352 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
ALDH1A1P00352 AC022413.1-201ENST00000624602 984 ntBASIC30.61■■■□□ 2.49
ALDH1A1P00352 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
ALDH1A1P00352 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
ALDH1A1P00352 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.59■■■□□ 2.49
ALDH1A1P00352 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
ALDH1A1P00352 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.58■■■□□ 2.49
ALDH1A1P00352 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC30.58■■■□□ 2.49
ALDH1A1P00352 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
ALDH1A1P00352 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
ALDH1A1P00352 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
ALDH1A1P00352 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
ALDH1A1P00352 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
ALDH1A1P00352 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
ALDH1A1P00352 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
ALDH1A1P00352 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.55■■■□□ 2.48
ALDH1A1P00352 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
ALDH1A1P00352 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.55■■■□□ 2.48
ALDH1A1P00352 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
ALDH1A1P00352 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
ALDH1A1P00352 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
ALDH1A1P00352 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
ALDH1A1P00352 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
ALDH1A1P00352 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms