Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.99■□□□□ 0.47
MMP28Q9H239 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
MMP28Q9H239 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MMP28Q9H239 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
MMP28Q9H239 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.99■□□□□ 0.47
MMP28Q9H239 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
MMP28Q9H239 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
MMP28Q9H239 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 ERF-202ENST00000440177 2032 ntTSL 2 BASIC17.98■□□□□ 0.47
MMP28Q9H239 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC17.98■□□□□ 0.47
MMP28Q9H239 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC17.98■□□□□ 0.47
MMP28Q9H239 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.98■□□□□ 0.47
MMP28Q9H239 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.98■□□□□ 0.47
MMP28Q9H239 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
MMP28Q9H239 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MMP28Q9H239 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
MMP28Q9H239 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.97■□□□□ 0.47
MMP28Q9H239 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC17.97■□□□□ 0.47
MMP28Q9H239 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
MMP28Q9H239 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 SERBP1P1-201ENST00000396021 1160 ntBASIC17.97■□□□□ 0.47
MMP28Q9H239 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.97■□□□□ 0.47
MMP28Q9H239 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC17.97■□□□□ 0.47
MMP28Q9H239 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
MMP28Q9H239 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
MMP28Q9H239 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.97■□□□□ 0.47
MMP28Q9H239 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
MMP28Q9H239 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MMP28Q9H239 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.96■□□□□ 0.47
MMP28Q9H239 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MMP28Q9H239 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MMP28Q9H239 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MMP28Q9H239 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
MMP28Q9H239 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MMP28Q9H239 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC17.96■□□□□ 0.47
MMP28Q9H239 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.96■□□□□ 0.47
MMP28Q9H239 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.96■□□□□ 0.47
MMP28Q9H239 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MMP28Q9H239 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC17.96■□□□□ 0.47
MMP28Q9H239 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MMP28Q9H239 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.96■□□□□ 0.47
MMP28Q9H239 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MMP28Q9H239 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MMP28Q9H239 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
MMP28Q9H239 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
MMP28Q9H239 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.96■□□□□ 0.47
MMP28Q9H239 AC005082.1-201ENST00000413042 2259 ntBASIC17.96■□□□□ 0.47
MMP28Q9H239 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
MMP28Q9H239 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
MMP28Q9H239 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
MMP28Q9H239 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
MMP28Q9H239 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
MMP28Q9H239 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
MMP28Q9H239 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
MMP28Q9H239 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.95■□□□□ 0.46
MMP28Q9H239 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC17.95■□□□□ 0.46
MMP28Q9H239 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.95■□□□□ 0.46
MMP28Q9H239 AC011298.3-201ENST00000615796 283 ntBASIC17.95■□□□□ 0.46
MMP28Q9H239 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
MMP28Q9H239 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MMP28Q9H239 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.95■□□□□ 0.46
MMP28Q9H239 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms