Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
ZNF560Q96MR9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.92■■□□□ 1.1
ZNF560Q96MR9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF560Q96MR9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 MIR2861-201ENST00000636310 90 ntBASIC21.9■■□□□ 1.1
ZNF560Q96MR9 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF560Q96MR9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
ZNF560Q96MR9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
ZNF560Q96MR9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
ZNF560Q96MR9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
ZNF560Q96MR9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 RNA5SP413-201ENST00000516373 109 ntBASIC21.88■■□□□ 1.09
ZNF560Q96MR9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF560Q96MR9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 PLK5-205ENST00000642079 1969 ntBASIC21.87■■□□□ 1.09
ZNF560Q96MR9 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.87■■□□□ 1.09
ZNF560Q96MR9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms