Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
LINC00643Q86TS7 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
LINC00643Q86TS7 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.35
LINC00643Q86TS7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LINC00643Q86TS7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC12.83□□□□□ -0.35
LINC00643Q86TS7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
LINC00643Q86TS7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC12.83□□□□□ -0.35
LINC00643Q86TS7 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
LINC00643Q86TS7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC12.83□□□□□ -0.35
LINC00643Q86TS7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC12.83□□□□□ -0.35
LINC00643Q86TS7 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC12.83□□□□□ -0.36
LINC00643Q86TS7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 FER1L4-210ENST00000615531 5998 ntBASIC12.82□□□□□ -0.36
LINC00643Q86TS7 AC011270.2-201ENST00000624293 2550 ntBASIC12.82□□□□□ -0.36
LINC00643Q86TS7 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 PWWP2AP1-201ENST00000429776 2273 ntBASIC12.82□□□□□ -0.36
LINC00643Q86TS7 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 AC018755.3-202ENST00000596210 929 ntBASIC12.82□□□□□ -0.36
LINC00643Q86TS7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 AL139384.1-201ENST00000612143 3047 ntBASIC12.82□□□□□ -0.36
LINC00643Q86TS7 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
LINC00643Q86TS7 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms