Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.58■■□□□ 1.2
CLCN3P51790 LINC00565-201ENST00000562710 2331 ntBASIC22.58■■□□□ 1.2
CLCN3P51790 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.58■■□□□ 1.2
CLCN3P51790 AL049796.1-201ENST00000565336 1766 ntBASIC22.58■■□□□ 1.2
CLCN3P51790 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CLCN3P51790 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
CLCN3P51790 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCN3P51790 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCN3P51790 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCN3P51790 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.57■■□□□ 1.2
CLCN3P51790 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCN3P51790 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
CLCN3P51790 PGM5P4-201ENST00000421970 445 ntBASIC22.57■■□□□ 1.2
CLCN3P51790 RPS2P52-201ENST00000469610 820 ntBASIC22.57■■□□□ 1.2
CLCN3P51790 SLC29A4P2-201ENST00000504749 1089 ntBASIC22.57■■□□□ 1.2
CLCN3P51790 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCN3P51790 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCN3P51790 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CLCN3P51790 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CLCN3P51790 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CLCN3P51790 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CLCN3P51790 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CLCN3P51790 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CLCN3P51790 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC22.56■■□□□ 1.2
CLCN3P51790 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CLCN3P51790 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CLCN3P51790 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC22.56■■□□□ 1.2
CLCN3P51790 IRX5-204ENST00000560154 879 ntTSL 5 BASIC22.56■■□□□ 1.2
CLCN3P51790 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.56■■□□□ 1.2
CLCN3P51790 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CLCN3P51790 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CLCN3P51790 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CLCN3P51790 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC22.55■■□□□ 1.2
CLCN3P51790 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLCN3P51790 AF106564.1-201ENST00000607058 2553 ntBASIC22.55■■□□□ 1.2
CLCN3P51790 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLCN3P51790 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLCN3P51790 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CLCN3P51790 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLCN3P51790 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CLCN3P51790 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
CLCN3P51790 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC22.55■■□□□ 1.2
CLCN3P51790 UNC93B4-201ENST00000505679 747 ntBASIC22.55■■□□□ 1.2
CLCN3P51790 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC22.55■■□□□ 1.2
CLCN3P51790 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLCN3P51790 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC22.55■■□□□ 1.2
CLCN3P51790 SOX15-203ENST00000570788 1093 ntBASIC22.55■■□□□ 1.2
CLCN3P51790 FEM1AP4-201ENST00000443167 1987 ntBASIC22.55■■□□□ 1.2
CLCN3P51790 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLCN3P51790 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CLCN3P51790 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC22.55■■□□□ 1.2
CLCN3P51790 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
CLCN3P51790 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLCN3P51790 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.54■■□□□ 1.2
CLCN3P51790 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLCN3P51790 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
CLCN3P51790 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLCN3P51790 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLCN3P51790 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CLCN3P51790 REXO2-208ENST00000539754 791 ntTSL 2 BASIC22.54■■□□□ 1.2
CLCN3P51790 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC22.54■■□□□ 1.2
CLCN3P51790 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
CLCN3P51790 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLCN3P51790 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLCN3P51790 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLCN3P51790 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC22.54■■□□□ 1.2
CLCN3P51790 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
CLCN3P51790 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CLCN3P51790 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC22.53■■□□□ 1.2
CLCN3P51790 OR2A1-AS1-207ENST00000486094 819 ntBASIC22.53■■□□□ 1.2
CLCN3P51790 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC22.53■■□□□ 1.2
CLCN3P51790 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.53■■□□□ 1.2
CLCN3P51790 MMD2-204ENST00000612910 778 ntTSL 5 BASIC22.53■■□□□ 1.2
CLCN3P51790 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC22.53■■□□□ 1.2
CLCN3P51790 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
CLCN3P51790 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLCN3P51790 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CLCN3P51790 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CLCN3P51790 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
CLCN3P51790 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CLCN3P51790 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CLCN3P51790 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.52■■□□□ 1.2
CLCN3P51790 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CLCN3P51790 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
CLCN3P51790 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CLCN3P51790 GCSHP5-201ENST00000443090 522 ntBASIC22.52■■□□□ 1.2
CLCN3P51790 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CLCN3P51790 AC027702.1-201ENST00000563810 1770 ntBASIC22.52■■□□□ 1.2
CLCN3P51790 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CLCN3P51790 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms