Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.36■■□□□ 1.01
LIG3P49916 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.36■■□□□ 1.01
LIG3P49916 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.36■■□□□ 1.01
LIG3P49916 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIG3P49916 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.36■■□□□ 1.01
LIG3P49916 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIG3P49916 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.36■■□□□ 1.01
LIG3P49916 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LIG3P49916 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.36■■□□□ 1.01
LIG3P49916 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.36■■□□□ 1.01
LIG3P49916 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.36■■□□□ 1.01
LIG3P49916 AL137784.2-201ENST00000607332 1000 ntBASIC21.36■■□□□ 1.01
LIG3P49916 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.36■■□□□ 1.01
LIG3P49916 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.36■■□□□ 1.01
LIG3P49916 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.36■■□□□ 1.01
LIG3P49916 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIG3P49916 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.36■■□□□ 1.01
LIG3P49916 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
LIG3P49916 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.35■■□□□ 1.01
LIG3P49916 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
LIG3P49916 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.35■■□□□ 1.01
LIG3P49916 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
LIG3P49916 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.35■■□□□ 1.01
LIG3P49916 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.35■■□□□ 1.01
LIG3P49916 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.35■■□□□ 1.01
LIG3P49916 AC104187.1-201ENST00000607510 612 ntBASIC21.35■■□□□ 1.01
LIG3P49916 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
LIG3P49916 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.35■■□□□ 1.01
LIG3P49916 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.35■■□□□ 1.01
LIG3P49916 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
LIG3P49916 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIG3P49916 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIG3P49916 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIG3P49916 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIG3P49916 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
LIG3P49916 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.34■■□□□ 1.01
LIG3P49916 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.34■■□□□ 1.01
LIG3P49916 AC137761.2-201ENST00000561729 223 ntBASIC21.34■■□□□ 1.01
LIG3P49916 AC145350.3-201ENST00000569033 163 ntBASIC21.34■■□□□ 1.01
LIG3P49916 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
LIG3P49916 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
LIG3P49916 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LIG3P49916 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LIG3P49916 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.34■■□□□ 1.01
LIG3P49916 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LIG3P49916 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIG3P49916 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIG3P49916 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIG3P49916 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
LIG3P49916 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LIG3P49916 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
LIG3P49916 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.33■■□□□ 1.01
LIG3P49916 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
LIG3P49916 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LIG3P49916 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LIG3P49916 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.33■■□□□ 1.01
LIG3P49916 AC004911.1-201ENST00000416316 871 ntBASIC21.33■■□□□ 1.01
LIG3P49916 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
LIG3P49916 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.33■■□□□ 1.01
LIG3P49916 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.33■■□□□ 1
LIG3P49916 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.33■■□□□ 1
LIG3P49916 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LIG3P49916 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
LIG3P49916 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.32■■□□□ 1
LIG3P49916 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
LIG3P49916 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.32■■□□□ 1
LIG3P49916 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
LIG3P49916 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.32■■□□□ 1
LIG3P49916 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LIG3P49916 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LIG3P49916 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.31■■□□□ 1
LIG3P49916 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LIG3P49916 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.31■■□□□ 1
LIG3P49916 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.31■■□□□ 1
LIG3P49916 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.31■■□□□ 1
LIG3P49916 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LIG3P49916 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LIG3P49916 AC016769.1-201ENST00000409132 1010 ntBASIC21.31■■□□□ 1
LIG3P49916 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.31■■□□□ 1
LIG3P49916 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.31■■□□□ 1
LIG3P49916 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms