Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSX2P35548 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSX2P35548 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSX2P35548 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSX2P35548 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.5■□□□□ 0.71
MSX2P35548 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
MSX2P35548 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.5■□□□□ 0.71
MSX2P35548 MIR3621-201ENST00000580529 85 ntBASIC19.5■□□□□ 0.71
MSX2P35548 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSX2P35548 AC092171.4-201ENST00000609130 632 ntBASIC19.5■□□□□ 0.71
MSX2P35548 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.5■□□□□ 0.71
MSX2P35548 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
MSX2P35548 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSX2P35548 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
MSX2P35548 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.49■□□□□ 0.71
MSX2P35548 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.49■□□□□ 0.71
MSX2P35548 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.49■□□□□ 0.71
MSX2P35548 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.49■□□□□ 0.71
MSX2P35548 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
MSX2P35548 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.49■□□□□ 0.71
MSX2P35548 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
MSX2P35548 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.49■□□□□ 0.71
MSX2P35548 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.49■□□□□ 0.71
MSX2P35548 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
MSX2P35548 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
MSX2P35548 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MSX2P35548 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.48■□□□□ 0.71
MSX2P35548 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.48■□□□□ 0.71
MSX2P35548 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.48■□□□□ 0.71
MSX2P35548 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.48■□□□□ 0.71
MSX2P35548 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.48■□□□□ 0.71
MSX2P35548 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.48■□□□□ 0.71
MSX2P35548 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.48■□□□□ 0.71
MSX2P35548 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 AC092720.2-201ENST00000602388 1665 ntBASIC19.48■□□□□ 0.71
MSX2P35548 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.48■□□□□ 0.71
MSX2P35548 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
MSX2P35548 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
MSX2P35548 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MSX2P35548 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.47■□□□□ 0.71
MSX2P35548 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.47■□□□□ 0.71
MSX2P35548 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.47■□□□□ 0.71
MSX2P35548 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.47■□□□□ 0.71
MSX2P35548 AL512631.2-201ENST00000604634 923 ntBASIC19.47■□□□□ 0.71
MSX2P35548 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
MSX2P35548 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.47■□□□□ 0.71
MSX2P35548 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.47■□□□□ 0.71
MSX2P35548 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.47■□□□□ 0.71
MSX2P35548 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.47■□□□□ 0.71
MSX2P35548 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.47■□□□□ 0.71
MSX2P35548 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX2P35548 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.46■□□□□ 0.71
MSX2P35548 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.46■□□□□ 0.71
MSX2P35548 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.46■□□□□ 0.71
MSX2P35548 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.46■□□□□ 0.71
MSX2P35548 AC136469.2-201ENST00000623944 1028 ntBASIC19.46■□□□□ 0.71
MSX2P35548 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms