Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 NME1-201ENST00000013034 796 ntTSL 3 BASIC15.7■□□□□ 0.12e-8■■■□□ 16.9
YBX3P16989 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC22.06■■□□□ 1.121e-6■■■□□ 16.9
YBX3P16989 FADS2-204ENST00000517312 588 ntTSL 520.89■□□□□ 0.931e-6■■■□□ 16.9
YBX3P16989 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.85■□□□□ 0.611e-6■■■□□ 16.9
YBX3P16989 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.421e-6■■■□□ 16.9
YBX3P16989 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.88□□□□□ -0.031e-6■■■□□ 16.9
YBX3P16989 SCAMP3-205ENST00000472397 1030 ntTSL 314.18□□□□□ -0.148e-7■■■□□ 16.9
YBX3P16989 SCAMP3-206ENST00000478737 649 ntTSL 312.95□□□□□ -0.348e-7■■■□□ 16.9
YBX3P16989 FADS2-206ENST00000518606 510 ntTSL 49.24□□□□□ -0.931e-6■■■□□ 16.9
YBX3P16989 FADS2-208ENST00000521571 799 ntTSL 38.63□□□□□ -1.031e-6■■■□□ 16.9
YBX3P16989 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.842e-6■■■□□ 16.9
YBX3P16989 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.472e-6■■■□□ 16.9
YBX3P16989 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC23.41■■□□□ 1.342e-6■■■□□ 16.9
YBX3P16989 SNX5-209ENST00000476648 950 ntTSL 37.12□□□□□ -1.271e-6■■■□□ 16.9
YBX3P16989 EIF4A2-215ENST00000467585 570 ntTSL 216.74■□□□□ 0.272e-18■■■□□ 16.9
YBX3P16989 EIF4A2-224ENST00000495049 576 ntTSL 28.9□□□□□ -0.982e-18■■■□□ 16.9
YBX3P16989 EIF4A2-214ENST00000466362 545 ntTSL 25.17□□□□□ -1.582e-18■■■□□ 16.9
YBX3P16989 SEPT5-212ENST00000470814 2353 ntTSL 522.1■■□□□ 1.135e-7■■■□□ 16.9
YBX3P16989 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.735e-8■■■□□ 16.9
YBX3P16989 C9orf78-202ENST00000461349 783 ntTSL 318.39■□□□□ 0.535e-8■■■□□ 16.9
YBX3P16989 C9orf78-203ENST00000461539 637 ntTSL 511.92□□□□□ -0.55e-8■■■□□ 16.9
YBX3P16989 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.624e-7■■■□□ 16.8
YBX3P16989 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.044e-7■■■□□ 16.8
YBX3P16989 RNH1-212ENST00000527485 873 ntTSL 221.38■■□□□ 1.014e-7■■■□□ 16.8
YBX3P16989 RNH1-215ENST00000529306 870 ntTSL 321.38■■□□□ 1.014e-7■■■□□ 16.8
YBX3P16989 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.94e-7■■■□□ 16.8
YBX3P16989 RNH1-209ENST00000525522 3281 ntTSL 1 (best)13.09□□□□□ -0.314e-7■■■□□ 16.8
YBX3P16989 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC22.76■■□□□ 1.232e-6■■■□□ 16.8
YBX3P16989 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.42e-6■■■□□ 16.8
YBX3P16989 AC009779.3-201ENST00000551946 1024 ntTSL 216.46■□□□□ 0.232e-6■■■□□ 16.8
YBX3P16989 AC009779.3-203ENST00000257899 745 ntTSL 515.14■□□□□ 0.012e-6■■■□□ 16.8
YBX3P16989 BLOC1S1-206ENST00000553100 421 ntTSL 212.77□□□□□ -0.372e-6■■■□□ 16.8
YBX3P16989 AC009779.3-202ENST00000550412 3382 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.522e-6■■■□□ 16.8
YBX3P16989 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.022e-6■■■□□ 16.8
YBX3P16989 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC7.61□□□□□ -1.192e-6■■■□□ 16.8
YBX3P16989 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.222e-6■■■□□ 16.8
YBX3P16989 RAB3GAP2-202ENST00000358951 7257 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.621e-6■■■□□ 16.8
YBX3P16989 EIF5B-205ENST00000617677 4698 ntAPPRIS ALT1 TSL 5 BASIC10.94□□□□□ -0.665e-8■■■□□ 16.8
YBX3P16989 EIF5B-201ENST00000289371 5777 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.915e-8■■■□□ 16.8
YBX3P16989 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.649e-8■■■□□ 16.8
YBX3P16989 ANAPC11-220ENST00000584197 386 ntTSL 534.46■■■■□ 3.119e-8■■■□□ 16.8
YBX3P16989 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC29.31■■■□□ 2.289e-8■■■□□ 16.8
YBX3P16989 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC17.59■□□□□ 0.419e-8■■■□□ 16.8
YBX3P16989 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.952e-6■■■□□ 16.8
YBX3P16989 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.24e-6■■■□□ 16.8
YBX3P16989 MRPL45-204ENST00000619548 1554 ntTSL 3 BASIC14.4□□□□□ -0.18e-8■■■□□ 16.8
YBX3P16989 MRPL45-203ENST00000613675 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.168e-8■■■□□ 16.8
YBX3P16989 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.63e-25■■■□□ 16.8
YBX3P16989 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC24.61■■□□□ 1.532e-14■■■□□ 16.8
YBX3P16989 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC23.34■■□□□ 1.332e-14■■■□□ 16.8
YBX3P16989 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC22.02■■□□□ 1.122e-14■■■□□ 16.8
YBX3P16989 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC18.26■□□□□ 0.512e-14■■■□□ 16.8
YBX3P16989 SNHG15-204ENST00000579383 731 ntTSL 216.77■□□□□ 0.282e-14■■■□□ 16.8
YBX3P16989 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC16.52■□□□□ 0.242e-14■■■□□ 16.8
YBX3P16989 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.08■□□□□ 0.162e-14■■■□□ 16.8
YBX3P16989 TRIAP1-202ENST00000546954 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.112e-7■■■□□ 16.8
YBX3P16989 SNHG15-209ENST00000584686 541 ntTSL 3 BASIC15.49■□□□□ 0.072e-14■■■□□ 16.8
YBX3P16989 SNHG15-201ENST00000438705 509 ntTSL 3 BASIC15.48■□□□□ 0.072e-14■■■□□ 16.8
YBX3P16989 TRIAP1-201ENST00000302432 1153 ntTSL 214.76□□□□□ -0.052e-7■■■□□ 16.8
YBX3P16989 SNHG15-208ENST00000584327 505 ntTSL 3 BASIC13.95□□□□□ -0.182e-14■■■□□ 16.8
YBX3P16989 CLPP-205ENST00000596605 646 ntTSL 2 BASIC17.52■□□□□ 0.43e-7■■■□□ 16.8
YBX3P16989 CLPP-204ENST00000596149 745 ntTSL 2 BASIC16.14■□□□□ 0.173e-7■■■□□ 16.8
YBX3P16989 PRRC2C-212ENST00000498596 1066 ntTSL 38.6□□□□□ -1.031e-7■■■□□ 16.8
YBX3P16989 BCAT1-204ENST00000538118 4694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.734e-10■■■□□ 16.8
YBX3P16989 BCAT1-202ENST00000342945 4319 ntTSL 2 BASIC8.35□□□□□ -1.074e-10■■■□□ 16.8
YBX3P16989 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.71■□□□□ 0.265e-9■■■□□ 16.8
YBX3P16989 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.223e-16■■■□□ 16.8
YBX3P16989 TP53BP1-207ENST00000417342 594 ntTSL 314.31□□□□□ -0.128e-8■■■□□ 16.8
YBX3P16989 TP53BP1-204ENST00000411772 3976 ntTSL 510.07□□□□□ -0.88e-8■■■□□ 16.8
YBX3P16989 SRM-203ENST00000465788 402 ntTSL 517.45■□□□□ 0.383e-12■■■□□ 16.8
YBX3P16989 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC22.96■■□□□ 1.272e-13■■■□□ 16.8
YBX3P16989 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.942e-13■■■□□ 16.8
YBX3P16989 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.8■□□□□ 0.762e-13■■■□□ 16.8
YBX3P16989 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.71□□□□□ -1.665e-11■■■□□ 16.8
YBX3P16989 COPS5-210ENST00000521386 5691 ntTSL 1 (best)7.72□□□□□ -1.177e-7■■■□□ 16.8
YBX3P16989 MCM7-204ENST00000425308 1497 ntTSL 335.07■■■■□ 3.22e-19■■■□□ 16.8
YBX3P16989 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.458e-10■■■□□ 16.8
YBX3P16989 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC23.59■■□□□ 1.378e-10■■■□□ 16.8
YBX3P16989 MCM7-205ENST00000463722 1327 ntTSL 513.8□□□□□ -0.22e-19■■■□□ 16.8
YBX3P16989 PPP1CA-204ENST00000526510 1677 ntTSL 1 (best)23.17■■□□□ 1.37e-9■■■□□ 16.8
YBX3P16989 PPP1CA-208ENST00000532446 1465 ntTSL 521.9■■□□□ 1.17e-9■■■□□ 16.8
YBX3P16989 SLC5A6-217ENST00000488743 3174 ntTSL 212.4□□□□□ -0.424e-8■■■□□ 16.8
YBX3P16989 SLC5A6-201ENST00000310574 3231 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.554e-8■■■□□ 16.8
YBX3P16989 NT5C3B-212ENST00000495317 836 ntTSL 530.86■■■□□ 2.531e-8■■■□□ 16.8
YBX3P16989 NT5C3B-208ENST00000475053 675 ntTSL 328.51■■■□□ 2.151e-8■■■□□ 16.8
YBX3P16989 NT5C3B-205ENST00000460893 964 ntTSL 327.18■■□□□ 1.941e-8■■■□□ 16.8
YBX3P16989 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.074e-7■■■□□ 16.8
YBX3P16989 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.92■□□□□ 0.36e-13■■■□□ 16.8
YBX3P16989 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.036e-13■■■□□ 16.8
YBX3P16989 CTNNB1-211ENST00000465552 878 ntTSL 212.9□□□□□ -0.346e-13■■■□□ 16.8
YBX3P16989 CTNNB1-203ENST00000396185 3356 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.436e-13■■■□□ 16.8
YBX3P16989 CTNNB1-201ENST00000349496 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.536e-13■■■□□ 16.8
YBX3P16989 CTNNB1-204ENST00000405570 2513 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.786e-13■■■□□ 16.8
YBX3P16989 CTNNB1-214ENST00000485265 835 ntTSL 29.03□□□□□ -0.966e-13■■■□□ 16.8
YBX3P16989 CTNNB1-213ENST00000482042 1366 ntTSL 28.23□□□□□ -1.096e-13■■■□□ 16.8
YBX3P16989 SNRNP40-203ENST00000463988 677 ntTSL 219.43■□□□□ 0.77e-10■■■□□ 16.7
YBX3P16989 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.91■□□□□ 0.32e-6■■■□□ 16.7
YBX3P16989 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.27■□□□□ 0.22e-6■■■□□ 16.7
YBX3P16989 AC097638.1-201ENST00000413663 515 ntBASIC15.38■□□□□ 0.052e-6■■■□□ 16.7
YBX3P16989 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.74□□□□□ -0.052e-6■■■□□ 16.7
Retrieved 100 of 29,075 protein–RNA pairs in 398.9 ms