RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	AEBP2	Q6ZN18	517 aa	Predicted RBP	17.13	■□□□□ 0.33
CNOT1-223	ENST00000628857	CHIC1	Q5VXU3	224 aa		16.8	■□□□□ 0.28
CNOT1-223	ENST00000628857	PHF23	Q9BUL5	403 aa	Predicted RBP	14.72	□□□□□ -0.05
CNOT1-223	ENST00000628857	SENP3	Q9H4L4	574 aa	Predicted RBP	14.64	□□□□□ -0.07
CNOT1-223	ENST00000628857	PLPPR3	Q6T4P5	718 aa		13.66	□□□□□ -0.22
CNOT1-223	ENST00000628857	FOXD1	Q16676	465 aa		13.52	□□□□□ -0.25
CNOT1-223	ENST00000628857	PPP6R1	Q9UPN7	881 aa		12.97	□□□□□ -0.33
CNOT1-223	ENST00000628857	ADRA2B	P18089	450 aa		12.93	□□□□□ -0.34
CNOT1-223	ENST00000628857	PIAS4	Q8N2W9	510 aa	Predicted RBP	12.72	□□□□□ -0.37
CNOT1-223	ENST00000628857	MSH5	O43196	834 aa		12.56	□□□□□ -0.4
CNOT1-223	ENST00000628857	PPP4R3CP	Q6ZMV5	832 aa		11.99	□□□□□ -0.49
CNOT1-223	ENST00000628857	SCAF1	Q9H7N4	1312 aa	Known RBP	11.99	□□□□□ -0.49
CNOT1-223	ENST00000628857	NCBP3	Q53F19	620 aa	Known RBP	11.74	□□□□□ -0.53
CNOT1-223	ENST00000628857	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.72	□□□□□ -0.53
CNOT1-223	ENST00000628857	CNKSR2	Q8WXI2	1034 aa		11.71	□□□□□ -0.53
CNOT1-223	ENST00000628857	DMRT2	Q9Y5R5	561 aa		11.67	□□□□□ -0.54
CNOT1-223	ENST00000628857	KCNA4	P22459	653 aa		11.63	□□□□□ -0.55
CNOT1-223	ENST00000628857	NPM3	O75607	178 aa	Known RBP	11.49	□□□□□ -0.57
CNOT1-223	ENST00000628857	RNF216	Q9NWF9	866 aa	Predicted RBP	11.49	□□□□□ -0.57
CNOT1-223	ENST00000628857	HOXD11	P31277	338 aa	Predicted RBP	11.46	□□□□□ -0.57
CNOT1-223	ENST00000628857	DNAJC5B	Q9UF47	199 aa		11.38	□□□□□ -0.59
CNOT1-223	ENST00000628857	POTED	Q86YR6	584 aa		11.37	□□□□□ -0.59
CNOT1-223	ENST00000628857	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.11	□□□□□ -0.63
CNOT1-223	ENST00000628857	DCAF8L1	A6NGE4	600 aa		11.03	□□□□□ -0.64
CNOT1-223	ENST00000628857	SLC4A2	P04920	1241 aa		10.85	□□□□□ -0.67
CNOT1-223	ENST00000628857	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.84	□□□□□ -0.67	1e-7	■■□□□ 13.9
CNOT1-223	ENST00000628857	FOXD4L1	Q9NU39	408 aa		10.78	□□□□□ -0.68
CNOT1-223	ENST00000628857	RNF39	Q9H2S5	420 aa		10.73	□□□□□ -0.69
CNOT1-223	ENST00000628857	ZBTB22	O15209	634 aa		10.69	□□□□□ -0.7
CNOT1-223	ENST00000628857	MYCN	P04198	464 aa	Predicted RBP	10.66	□□□□□ -0.7
CNOT1-223	ENST00000628857	CSRNP3	Q8WYN3	585 aa		10.66	□□□□□ -0.7
CNOT1-223	ENST00000628857	EHMT2	Q96KQ7	1210 aa		10.66	□□□□□ -0.7
CNOT1-223	ENST00000628857	C1QBP	Q07021	282 aa	Known RBP	10.65	□□□□□ -0.7
CNOT1-223	ENST00000628857		U3KPZ7	1027 aa	Predicted RBP	10.65	□□□□□ -0.7
CNOT1-223	ENST00000628857	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	10.64	□□□□□ -0.71
CNOT1-223	ENST00000628857	HNRNPUL2	Q1KMD3	747 aa	Known RBP	10.64	□□□□□ -0.71
CNOT1-223	ENST00000628857	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.57	□□□□□ -0.72
CNOT1-223	ENST00000628857	APLP2	Q06481	763 aa		10.54	□□□□□ -0.72
CNOT1-223	ENST00000628857	ATXN8OS	P0DMR3	200 aa		10.52	□□□□□ -0.73
CNOT1-223	ENST00000628857	CACNB1	Q02641	598 aa	Predicted RBP	10.41	□□□□□ -0.74
CNOT1-223	ENST00000628857	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.34	□□□□□ -0.75
CNOT1-223	ENST00000628857	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.32	□□□□□ -0.76
CNOT1-223	ENST00000628857	CAPN15	O75808	1086 aa		10.29	□□□□□ -0.76
CNOT1-223	ENST00000628857	ATF5	Q9Y2D1	282 aa	Predicted RBP	10.27	□□□□□ -0.77
CNOT1-223	ENST00000628857	TRH	P20396	242 aa	Predicted RBP	10.22	□□□□□ -0.77
CNOT1-223	ENST00000628857	DSG3	P32926	999 aa		10.18	□□□□□ -0.78
CNOT1-223	ENST00000628857	POLA2	Q14181	598 aa		10.1	□□□□□ -0.79
CNOT1-223	ENST00000628857	ABCB7	O75027	752 aa		10.04	□□□□□ -0.8
CNOT1-223	ENST00000628857	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.04	□□□□□ -0.8
CNOT1-223	ENST00000628857	FBLN2	P98095	1184 aa		9.94	□□□□□ -0.82
CNOT1-223	ENST00000628857	MKRN4P	Q13434	485 aa	Predicted RBP	9.86	□□□□□ -0.83
CNOT1-223	ENST00000628857	RBM42	Q9BTD8	480 aa	Known RBP	9.77	□□□□□ -0.85
CNOT1-223	ENST00000628857	SPDYE2B	A6NHP3	402 aa		9.75	□□□□□ -0.85
CNOT1-223	ENST00000628857	SPDYE6	P0CI01	402 aa		9.75	□□□□□ -0.85
CNOT1-223	ENST00000628857	SPDYE2	Q495Y8	402 aa		9.75	□□□□□ -0.85
CNOT1-223	ENST00000628857	OSCAR	Q8IYS5	282 aa		9.71	□□□□□ -0.86
CNOT1-223	ENST00000628857	SPDYE4	A6NLX3	237 aa		9.65	□□□□□ -0.86
CNOT1-223	ENST00000628857	SSUH2	Q9Y2M2	353 aa		9.65	□□□□□ -0.86
CNOT1-223	ENST00000628857	AKT1S1	Q96B36	256 aa		9.64	□□□□□ -0.87
CNOT1-223	ENST00000628857	ZNF692	Q9BU19	519 aa	Predicted RBP	9.64	□□□□□ -0.87
CNOT1-223	ENST00000628857	FKBP8	Q14318	412 aa		9.6	□□□□□ -0.87
CNOT1-223	ENST00000628857	PROM2	Q8N271	834 aa		9.59	□□□□□ -0.87
CNOT1-223	ENST00000628857	PABPN1	Q86U42	306 aa	Known RBP eCLIP	9.49	□□□□□ -0.89
CNOT1-223	ENST00000628857	REM2	Q8IYK8	340 aa	Predicted RBP	9.48	□□□□□ -0.89
CNOT1-223	ENST00000628857	STAG3	Q9UJ98	1225 aa		9.46	□□□□□ -0.9
CNOT1-223	ENST00000628857	SPDYE1	Q8NFV5	336 aa	Predicted RBP	9.44	□□□□□ -0.9
CNOT1-223	ENST00000628857	FBXO3	Q9UK99	471 aa		9.4	□□□□□ -0.9
CNOT1-223	ENST00000628857	PITPNM1	O00562	1244 aa		9.34	□□□□□ -0.91
CNOT1-223	ENST00000628857	CHRDL2	Q6WN34	429 aa		9.29	□□□□□ -0.92
CNOT1-223	ENST00000628857	CLEC11A	Q9Y240	323 aa		9.29	□□□□□ -0.92
CNOT1-223	ENST00000628857	PRR29	P0C7W0	189 aa		9.28	□□□□□ -0.92
CNOT1-223	ENST00000628857	FXR2	P51116	673 aa	Known RBP eCLIP	9.25	□□□□□ -0.93	2e-9	■■■■□ 20.3
CNOT1-223	ENST00000628857	VASP	P50552	380 aa	Predicted RBP	9.19	□□□□□ -0.94
CNOT1-223	ENST00000628857	PLEKHG5	O94827	1062 aa		9.17	□□□□□ -0.94
CNOT1-223	ENST00000628857	PIP4P2	Q8N4L2	257 aa		9.16	□□□□□ -0.94
CNOT1-223	ENST00000628857	MIER1	Q8N108	512 aa		9.15	□□□□□ -0.94
CNOT1-223	ENST00000628857	CREBZF	Q9NS37	354 aa		9.15	□□□□□ -0.94
CNOT1-223	ENST00000628857	ZBTB47	Q9UFB7	747 aa	Predicted RBP	9.14	□□□□□ -0.95
CNOT1-223	ENST00000628857	PLCD3	Q8N3E9	789 aa		9.13	□□□□□ -0.95
CNOT1-223	ENST00000628857	PRKAR2A	P13861	404 aa	Known RBP	9.11	□□□□□ -0.95
CNOT1-223	ENST00000628857	MNX1	P50219	401 aa	Predicted RBP	9.08	□□□□□ -0.96
CNOT1-223	ENST00000628857	NPM1	P06748	294 aa	Known RBP eCLIP	9.06	□□□□□ -0.96
CNOT1-223	ENST00000628857	CHADL	Q6NUI6	762 aa		9.05	□□□□□ -0.96
CNOT1-223	ENST00000628857	IFNLR1	Q8IU57	520 aa	Predicted RBP	9.05	□□□□□ -0.96
CNOT1-223	ENST00000628857	FARP1	Q9Y4F1	1045 aa	Predicted RBP	9.05	□□□□□ -0.96
CNOT1-223	ENST00000628857	POTEH	Q6S545	545 aa		9.02	□□□□□ -0.97
CNOT1-223	ENST00000628857	KLHL34	Q8N239	644 aa		8.99	□□□□□ -0.97
CNOT1-223	ENST00000628857	SPOCK2	Q92563	424 aa		8.97	□□□□□ -0.97
CNOT1-223	ENST00000628857	NUBP1	P53384	320 aa		8.95	□□□□□ -0.98
CNOT1-223	ENST00000628857	C19orf67	A6NJJ6	358 aa		8.92	□□□□□ -0.98
CNOT1-223	ENST00000628857	GSE1	Q14687	1217 aa		8.88	□□□□□ -0.99
CNOT1-223	ENST00000628857	PAK3	O75914	559 aa	Predicted RBP	8.87	□□□□□ -0.99
CNOT1-223	ENST00000628857	FAM212A	Q96EL1	285 aa		8.87	□□□□□ -0.99
CNOT1-223	ENST00000628857	CLCN6	P51797	869 aa		8.86	□□□□□ -0.99
CNOT1-223	ENST00000628857	RASEF	Q8IZ41	740 aa		8.86	□□□□□ -0.99
CNOT1-223	ENST00000628857	HAX1	O00165	279 aa		8.85	□□□□□ -0.99
CNOT1-223	ENST00000628857	CD44	P16070	742 aa	Known RBP	8.85	□□□□□ -0.99
CNOT1-223	ENST00000628857	TRIM41	Q8WV44	630 aa		8.85	□□□□□ -0.99
CNOT1-223	ENST00000628857	CHRM1	P11229	460 aa	Predicted RBP	8.82	□□□□□ -1
CNOT1-223	ENST00000628857	AMER1	Q5JTC6	1135 aa	Predicted RBP	8.81	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms