Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 OR2I1P-207ENST00000453522 948 ntBASIC20.52■□□□□ 0.88
VIMP08670 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.52■□□□□ 0.88
VIMP08670 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.52■□□□□ 0.88
VIMP08670 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VIMP08670 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VIMP08670 AC020763.4-201ENST00000623414 4170 ntBASIC20.52■□□□□ 0.88
VIMP08670 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VIMP08670 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VIMP08670 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VIMP08670 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VIMP08670 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
VIMP08670 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.87
VIMP08670 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VIMP08670 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VIMP08670 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VIMP08670 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VIMP08670 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
VIMP08670 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
VIMP08670 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VIMP08670 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
VIMP08670 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.51■□□□□ 0.87
VIMP08670 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.51■□□□□ 0.87
VIMP08670 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VIMP08670 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.51■□□□□ 0.87
VIMP08670 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VIMP08670 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.51■□□□□ 0.87
VIMP08670 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
VIMP08670 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.51■□□□□ 0.87
VIMP08670 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VIMP08670 AC125437.2-201ENST00000625180 2167 ntBASIC20.51■□□□□ 0.87
VIMP08670 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VIMP08670 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
VIMP08670 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.5■□□□□ 0.87
VIMP08670 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.5■□□□□ 0.87
VIMP08670 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
VIMP08670 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
VIMP08670 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.5■□□□□ 0.87
VIMP08670 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.5■□□□□ 0.87
VIMP08670 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VIMP08670 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.5■□□□□ 0.87
VIMP08670 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
VIMP08670 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
VIMP08670 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.49■□□□□ 0.87
VIMP08670 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.49■□□□□ 0.87
VIMP08670 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.49■□□□□ 0.87
VIMP08670 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
VIMP08670 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VIMP08670 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.49■□□□□ 0.87
VIMP08670 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.49■□□□□ 0.87
VIMP08670 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VIMP08670 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VIMP08670 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VIMP08670 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.48■□□□□ 0.87
VIMP08670 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.48■□□□□ 0.87
VIMP08670 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
VIMP08670 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
VIMP08670 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.48■□□□□ 0.87
VIMP08670 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
VIMP08670 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VIMP08670 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.48■□□□□ 0.87
VIMP08670 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VIMP08670 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
VIMP08670 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.47■□□□□ 0.87
VIMP08670 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
VIMP08670 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VIMP08670 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms