Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CLDN9O95484 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 AC092720.2-201ENST00000602388 1665 ntBASIC19.79■□□□□ 0.76
CLDN9O95484 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 AC007322.3-201ENST00000426526 701 ntBASIC19.79■□□□□ 0.76
CLDN9O95484 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
CLDN9O95484 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.79■□□□□ 0.76
CLDN9O95484 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.79■□□□□ 0.76
CLDN9O95484 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.79■□□□□ 0.76
CLDN9O95484 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.79■□□□□ 0.76
CLDN9O95484 MIR6821-201ENST00000617625 74 ntBASIC19.79■□□□□ 0.76
CLDN9O95484 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.79■□□□□ 0.76
CLDN9O95484 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.79■□□□□ 0.76
CLDN9O95484 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLDN9O95484 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.79■□□□□ 0.76
CLDN9O95484 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CLDN9O95484 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.78■□□□□ 0.76
CLDN9O95484 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CLDN9O95484 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.78■□□□□ 0.76
CLDN9O95484 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CLDN9O95484 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.78■□□□□ 0.76
CLDN9O95484 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CLDN9O95484 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.78■□□□□ 0.76
CLDN9O95484 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.78■□□□□ 0.76
CLDN9O95484 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.78■□□□□ 0.76
CLDN9O95484 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.78■□□□□ 0.76
CLDN9O95484 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CLDN9O95484 MYCNOS-205ENST00000641950 531 ntBASIC19.78■□□□□ 0.76
CLDN9O95484 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.78■□□□□ 0.76
CLDN9O95484 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.78■□□□□ 0.76
CLDN9O95484 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.78■□□□□ 0.76
CLDN9O95484 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
CLDN9O95484 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLDN9O95484 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CLDN9O95484 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN9O95484 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.77■□□□□ 0.76
CLDN9O95484 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN9O95484 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN9O95484 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CLDN9O95484 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN9O95484 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN9O95484 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN9O95484 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CLDN9O95484 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CLDN9O95484 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CLDN9O95484 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CLDN9O95484 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CLDN9O95484 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CLDN9O95484 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.76■□□□□ 0.75
CLDN9O95484 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.76■□□□□ 0.75
CLDN9O95484 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CLDN9O95484 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.76■□□□□ 0.75
CLDN9O95484 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CLDN9O95484 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CLDN9O95484 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.76■□□□□ 0.75
CLDN9O95484 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLDN9O95484 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CLDN9O95484 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 AL162377.1-201ENST00000618844 1793 ntBASIC19.75■□□□□ 0.75
CLDN9O95484 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.75■□□□□ 0.75
CLDN9O95484 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.75■□□□□ 0.75
CLDN9O95484 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CLDN9O95484 AL512408.1-201ENST00000569378 2000 ntBASIC19.75■□□□□ 0.75
CLDN9O95484 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms