Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.06■□□□□ 0.8
SDC3O75056 AC087633.2-202ENST00000565166 1439 ntBASIC20.06■□□□□ 0.8
SDC3O75056 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.06■□□□□ 0.8
SDC3O75056 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.06■□□□□ 0.8
SDC3O75056 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.06■□□□□ 0.8
SDC3O75056 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.06■□□□□ 0.8
SDC3O75056 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SDC3O75056 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
SDC3O75056 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SDC3O75056 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SDC3O75056 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.05■□□□□ 0.8
SDC3O75056 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.05■□□□□ 0.8
SDC3O75056 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SDC3O75056 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.05■□□□□ 0.8
SDC3O75056 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
SDC3O75056 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.05■□□□□ 0.8
SDC3O75056 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.05■□□□□ 0.8
SDC3O75056 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SDC3O75056 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.05■□□□□ 0.8
SDC3O75056 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SDC3O75056 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.04■□□□□ 0.8
SDC3O75056 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.04■□□□□ 0.8
SDC3O75056 Z99916.2-201ENST00000604037 246 ntBASIC20.04■□□□□ 0.8
SDC3O75056 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.04■□□□□ 0.8
SDC3O75056 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
SDC3O75056 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SDC3O75056 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SDC3O75056 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.03■□□□□ 0.8
SDC3O75056 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SDC3O75056 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.03■□□□□ 0.8
SDC3O75056 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SDC3O75056 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SDC3O75056 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SDC3O75056 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SDC3O75056 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.03■□□□□ 0.8
SDC3O75056 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SDC3O75056 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SDC3O75056 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.03■□□□□ 0.8
SDC3O75056 AC006557.6-201ENST00000623071 864 ntBASIC20.03■□□□□ 0.8
SDC3O75056 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.03■□□□□ 0.8
SDC3O75056 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SDC3O75056 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SDC3O75056 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.03■□□□□ 0.8
SDC3O75056 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.03■□□□□ 0.8
SDC3O75056 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.03■□□□□ 0.8
SDC3O75056 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.02■□□□□ 0.8
SDC3O75056 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 SNORA78-201ENST00000459373 127 ntBASIC20.02■□□□□ 0.8
SDC3O75056 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.02■□□□□ 0.8
SDC3O75056 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.02■□□□□ 0.8
SDC3O75056 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SDC3O75056 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SDC3O75056 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
SDC3O75056 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.01■□□□□ 0.79
SDC3O75056 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.01■□□□□ 0.79
SDC3O75056 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.01■□□□□ 0.79
SDC3O75056 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms