Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.37■□□□□ 0.37
SDCBPO00560 IRS3P-201ENST00000223076 1006 ntBASIC17.37■□□□□ 0.37
SDCBPO00560 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.37■□□□□ 0.37
SDCBPO00560 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.37■□□□□ 0.37
SDCBPO00560 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.37■□□□□ 0.37
SDCBPO00560 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.37■□□□□ 0.37
SDCBPO00560 MIR6084-201ENST00000622012 110 ntBASIC17.37■□□□□ 0.37
SDCBPO00560 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.37■□□□□ 0.37
SDCBPO00560 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.37■□□□□ 0.37
SDCBPO00560 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SDCBPO00560 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.37■□□□□ 0.37
SDCBPO00560 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDCBPO00560 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDCBPO00560 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDCBPO00560 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.36■□□□□ 0.37
SDCBPO00560 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.36■□□□□ 0.37
SDCBPO00560 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
SDCBPO00560 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.36■□□□□ 0.37
SDCBPO00560 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.36■□□□□ 0.37
SDCBPO00560 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.36■□□□□ 0.37
SDCBPO00560 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDCBPO00560 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
SDCBPO00560 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDCBPO00560 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDCBPO00560 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SDCBPO00560 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDCBPO00560 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SDCBPO00560 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SDCBPO00560 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SDCBPO00560 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.35■□□□□ 0.37
SDCBPO00560 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SDCBPO00560 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.35■□□□□ 0.37
SDCBPO00560 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.35■□□□□ 0.37
SDCBPO00560 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17.35■□□□□ 0.37
SDCBPO00560 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.35■□□□□ 0.37
SDCBPO00560 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SDCBPO00560 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SDCBPO00560 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDCBPO00560 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDCBPO00560 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SDCBPO00560 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDCBPO00560 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SDCBPO00560 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDCBPO00560 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SDCBPO00560 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SDCBPO00560 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.34■□□□□ 0.37
SDCBPO00560 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.34■□□□□ 0.37
SDCBPO00560 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SDCBPO00560 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SDCBPO00560 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.33■□□□□ 0.37
SDCBPO00560 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.33■□□□□ 0.37
SDCBPO00560 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SDCBPO00560 AL162377.1-201ENST00000618844 1793 ntBASIC17.33■□□□□ 0.37
SDCBPO00560 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SDCBPO00560 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SDCBPO00560 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
SDCBPO00560 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDCBPO00560 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDCBPO00560 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDCBPO00560 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SDCBPO00560 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
SDCBPO00560 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SDCBPO00560 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SDCBPO00560 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SDCBPO00560 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDCBPO00560 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDCBPO00560 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SDCBPO00560 AC099778.1-201ENST00000568593 1911 ntBASIC17.33■□□□□ 0.36
SDCBPO00560 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SDCBPO00560 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.33■□□□□ 0.36
SDCBPO00560 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
SDCBPO00560 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SDCBPO00560 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.32■□□□□ 0.36
SDCBPO00560 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
SDCBPO00560 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms