Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 AC079630.1-202ENST00000618127 1840 ntBASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 AP002365.1-201ENST00000603448 772 ntBASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 AC010542.4-201ENST00000563151 1910 ntBASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CHKB-CPT1BH3BT56 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 AL359258.2-201ENST00000564063 1566 ntBASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 AL133373.2-201ENST00000623187 2828 ntBASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 AL032819.2-201ENST00000624543 2162 ntBASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 H19-210ENST00000439725 1929 ntTSL 2 BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 PCDHAC2-203ENST00000615316 3011 ntBASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
CHKB-CPT1BH3BT56 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 AL391121.1-201ENST00000607967 1349 ntBASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 AL161729.1-201ENST00000604104 1402 ntBASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 EI24-213ENST00000618552 1747 ntTSL 5 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
CHKB-CPT1BH3BT56 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.59
CHKB-CPT1BH3BT56 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC11.4□□□□□ -0.59
CHKB-CPT1BH3BT56 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
CHKB-CPT1BH3BT56 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
CHKB-CPT1BH3BT56 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
CHKB-CPT1BH3BT56 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
CHKB-CPT1BH3BT56 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
CHKB-CPT1BH3BT56 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms