Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.76■■□□□ 1.07
CDX2Q99626 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.76■■□□□ 1.07
CDX2Q99626 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.76■■□□□ 1.07
CDX2Q99626 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDX2Q99626 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
CDX2Q99626 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.75■■□□□ 1.07
CDX2Q99626 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.75■■□□□ 1.07
CDX2Q99626 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDX2Q99626 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDX2Q99626 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CDX2Q99626 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDX2Q99626 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.75■■□□□ 1.07
CDX2Q99626 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.75■■□□□ 1.07
CDX2Q99626 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CDX2Q99626 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.75■■□□□ 1.07
CDX2Q99626 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.75■■□□□ 1.07
CDX2Q99626 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDX2Q99626 NBPF21P-201ENST00000425093 1451 ntBASIC21.75■■□□□ 1.07
CDX2Q99626 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.75■■□□□ 1.07
CDX2Q99626 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.75■■□□□ 1.07
CDX2Q99626 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDX2Q99626 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.75■■□□□ 1.07
CDX2Q99626 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDX2Q99626 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDX2Q99626 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDX2Q99626 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21.74■■□□□ 1.07
CDX2Q99626 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDX2Q99626 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.74■■□□□ 1.07
CDX2Q99626 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDX2Q99626 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.74■■□□□ 1.07
CDX2Q99626 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.74■■□□□ 1.07
CDX2Q99626 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDX2Q99626 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDX2Q99626 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.74■■□□□ 1.07
CDX2Q99626 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.74■■□□□ 1.07
CDX2Q99626 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CDX2Q99626 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CDX2Q99626 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDX2Q99626 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDX2Q99626 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDX2Q99626 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CDX2Q99626 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDX2Q99626 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.73■■□□□ 1.07
CDX2Q99626 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CDX2Q99626 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
CDX2Q99626 AL031133.1-201ENST00000406807 723 ntBASIC21.73■■□□□ 1.07
CDX2Q99626 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CDX2Q99626 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.73■■□□□ 1.07
CDX2Q99626 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.73■■□□□ 1.07
CDX2Q99626 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDX2Q99626 AP002982.1-201ENST00000492365 877 ntBASIC21.73■■□□□ 1.07
CDX2Q99626 AC116562.2-201ENST00000507042 360 ntBASIC21.73■■□□□ 1.07
CDX2Q99626 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.73■■□□□ 1.07
CDX2Q99626 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.73■■□□□ 1.07
CDX2Q99626 AP000550.4-202ENST00000639755 178 ntBASIC21.73■■□□□ 1.07
CDX2Q99626 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.73■■□□□ 1.07
CDX2Q99626 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDX2Q99626 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.73■■□□□ 1.07
CDX2Q99626 AC003102.1-202ENST00000563394 1796 ntBASIC21.73■■□□□ 1.07
CDX2Q99626 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.73■■□□□ 1.07
CDX2Q99626 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CDX2Q99626 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CDX2Q99626 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC21.72■■□□□ 1.07
CDX2Q99626 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.72■■□□□ 1.07
CDX2Q99626 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.72■■□□□ 1.07
CDX2Q99626 MYC-208ENST00000641036 567 ntBASIC21.72■■□□□ 1.07
CDX2Q99626 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
CDX2Q99626 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CDX2Q99626 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CDX2Q99626 ABCB10P4-201ENST00000566803 2184 ntBASIC21.71■■□□□ 1.07
CDX2Q99626 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDX2Q99626 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDX2Q99626 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.71■■□□□ 1.07
CDX2Q99626 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.71■■□□□ 1.07
CDX2Q99626 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.71■■□□□ 1.07
CDX2Q99626 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDX2Q99626 AL121829.2-201ENST00000620908 328 ntBASIC21.71■■□□□ 1.07
CDX2Q99626 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CDX2Q99626 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDX2Q99626 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDX2Q99626 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CDX2Q99626 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CDX2Q99626 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CDX2Q99626 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CDX2Q99626 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.07
CDX2Q99626 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms