Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 AC007322.3-201ENST00000426526 701 ntBASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 AC080038.3-201ENST00000623346 1952 ntBASIC16.98■□□□□ 0.31
CSPG4Q6UVK1 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 AC113410.3-201ENST00000623366 203 ntBASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CSPG4Q6UVK1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
CSPG4Q6UVK1 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.96■□□□□ 0.3
CSPG4Q6UVK1 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
CSPG4Q6UVK1 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.96■□□□□ 0.3
CSPG4Q6UVK1 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
CSPG4Q6UVK1 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CSPG4Q6UVK1 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CSPG4Q6UVK1 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.3
CSPG4Q6UVK1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CSPG4Q6UVK1 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CSPG4Q6UVK1 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 AC105020.6-201ENST00000621523 1217 ntBASIC16.95■□□□□ 0.3
CSPG4Q6UVK1 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 AC092053.2-201ENST00000640557 1818 ntBASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CSPG4Q6UVK1 KRT8P9-201ENST00000558927 1449 ntBASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms