Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 RNF165-205ENST00000588679 2904 ntBASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 KRT18P61-201ENST00000585825 1298 ntBASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC40Q4G0X9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.52■■□□□ 1.2
CCDC40Q4G0X9 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
CCDC40Q4G0X9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC22.52■■□□□ 1.19
CCDC40Q4G0X9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CCDC40Q4G0X9 AC116050.2-201ENST00000612102 1779 ntBASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CCDC40Q4G0X9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 AC020907.5-201ENST00000624372 1936 ntBASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CCDC40Q4G0X9 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms