Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LSM4Q9Y4Z0 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LSM4Q9Y4Z0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 AL391422.3-201ENST00000603791 2761 ntBASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 HLA-L-209ENST00000420110 1011 ntBASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 AC006015.1-201ENST00000429970 570 ntBASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LSM4Q9Y4Z0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 MFF-208ENST00000409616 1247 ntTSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 AC080038.1-201ENST00000611274 1154 ntBASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 AL162377.1-201ENST00000618844 1793 ntBASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LSM4Q9Y4Z0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.22
LSM4Q9Y4Z0 AFG3L1P-217ENST00000557444 2447 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms