Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
USP48Q86UV5 RPPH1-201ENST00000516869 333 ntBASIC25.21■■□□□ 1.63
USP48Q86UV5 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC25.21■■□□□ 1.63
USP48Q86UV5 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC25.21■■□□□ 1.63
USP48Q86UV5 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC25.21■■□□□ 1.63
USP48Q86UV5 FAM197Y4-202ENST00000622692 608 ntBASIC25.21■■□□□ 1.63
USP48Q86UV5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
USP48Q86UV5 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
USP48Q86UV5 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP48Q86UV5 AC005229.4-201ENST00000610085 2198 ntBASIC25.21■■□□□ 1.63
USP48Q86UV5 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP48Q86UV5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC25.21■■□□□ 1.63
USP48Q86UV5 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP48Q86UV5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC25.2■■□□□ 1.63
USP48Q86UV5 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
USP48Q86UV5 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
USP48Q86UV5 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
USP48Q86UV5 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC25.2■■□□□ 1.62
USP48Q86UV5 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
USP48Q86UV5 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
USP48Q86UV5 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.62
USP48Q86UV5 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC25.2■■□□□ 1.62
USP48Q86UV5 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
USP48Q86UV5 RNF146-206ENST00000480444 843 ntTSL 2 BASIC25.2■■□□□ 1.62
USP48Q86UV5 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC25.2■■□□□ 1.62
USP48Q86UV5 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC25.2■■□□□ 1.62
USP48Q86UV5 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
USP48Q86UV5 REXO1L12P-201ENST00000622156 912 ntBASIC25.2■■□□□ 1.62
USP48Q86UV5 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
USP48Q86UV5 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC25.2■■□□□ 1.62
USP48Q86UV5 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
USP48Q86UV5 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
USP48Q86UV5 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC25.2■■□□□ 1.62
USP48Q86UV5 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP48Q86UV5 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
USP48Q86UV5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP48Q86UV5 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP48Q86UV5 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP48Q86UV5 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC25.19■■□□□ 1.62
USP48Q86UV5 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC25.19■■□□□ 1.62
USP48Q86UV5 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
USP48Q86UV5 AL355472.2-201ENST00000422958 438 ntBASIC25.19■■□□□ 1.62
USP48Q86UV5 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
USP48Q86UV5 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC25.19■■□□□ 1.62
USP48Q86UV5 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC25.19■■□□□ 1.62
USP48Q86UV5 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC25.19■■□□□ 1.62
USP48Q86UV5 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC25.19■■□□□ 1.62
USP48Q86UV5 Z99916.2-201ENST00000604037 246 ntBASIC25.19■■□□□ 1.62
USP48Q86UV5 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC25.19■■□□□ 1.62
USP48Q86UV5 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC25.19■■□□□ 1.62
USP48Q86UV5 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP48Q86UV5 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
USP48Q86UV5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
USP48Q86UV5 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC25.18■■□□□ 1.62
USP48Q86UV5 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC25.18■■□□□ 1.62
USP48Q86UV5 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP48Q86UV5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP48Q86UV5 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25.18■■□□□ 1.62
USP48Q86UV5 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP48Q86UV5 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP48Q86UV5 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP48Q86UV5 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP48Q86UV5 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP48Q86UV5 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
USP48Q86UV5 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC25.18■■□□□ 1.62
USP48Q86UV5 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC25.18■■□□□ 1.62
USP48Q86UV5 C1QBPP2-201ENST00000528754 825 ntBASIC25.18■■□□□ 1.62
USP48Q86UV5 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
USP48Q86UV5 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC25.18■■□□□ 1.62
USP48Q86UV5 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC25.18■■□□□ 1.62
USP48Q86UV5 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC25.17■■□□□ 1.62
USP48Q86UV5 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
USP48Q86UV5 KRT17P1-201ENST00000399211 1546 ntBASIC25.17■■□□□ 1.62
USP48Q86UV5 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.17■■□□□ 1.62
USP48Q86UV5 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
USP48Q86UV5 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC25.17■■□□□ 1.62
USP48Q86UV5 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC25.17■■□□□ 1.62
USP48Q86UV5 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
USP48Q86UV5 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
USP48Q86UV5 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
USP48Q86UV5 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC25.17■■□□□ 1.62
USP48Q86UV5 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
USP48Q86UV5 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC25.16■■□□□ 1.62
USP48Q86UV5 RNF121-214ENST00000533380 870 ntTSL 3 BASIC25.16■■□□□ 1.62
USP48Q86UV5 AC010331.1-201ENST00000611423 582 ntBASIC25.16■■□□□ 1.62
USP48Q86UV5 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
USP48Q86UV5 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
USP48Q86UV5 KRT16P2-201ENST00000414673 1423 ntBASIC25.15■■□□□ 1.62
USP48Q86UV5 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USP48Q86UV5 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC25.15■■□□□ 1.62
USP48Q86UV5 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms