Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
KRT39Q6A163 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
KRT39Q6A163 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
KRT39Q6A163 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC22.22■■□□□ 1.15
KRT39Q6A163 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT39Q6A163 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT39Q6A163 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT39Q6A163 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT39Q6A163 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
KRT39Q6A163 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC22.22■■□□□ 1.15
KRT39Q6A163 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.22■■□□□ 1.15
KRT39Q6A163 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.22■■□□□ 1.15
KRT39Q6A163 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
KRT39Q6A163 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC22.22■■□□□ 1.15
KRT39Q6A163 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.22■■□□□ 1.15
KRT39Q6A163 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
KRT39Q6A163 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT39Q6A163 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
KRT39Q6A163 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
KRT39Q6A163 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.22■■□□□ 1.15
KRT39Q6A163 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC22.22■■□□□ 1.15
KRT39Q6A163 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.22■■□□□ 1.15
KRT39Q6A163 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT39Q6A163 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT39Q6A163 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC22.21■■□□□ 1.15
KRT39Q6A163 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
KRT39Q6A163 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT39Q6A163 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
KRT39Q6A163 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.21■■□□□ 1.15
KRT39Q6A163 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT39Q6A163 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC22.21■■□□□ 1.15
KRT39Q6A163 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
KRT39Q6A163 FAM21FP-204ENST00000608637 956 ntBASIC22.21■■□□□ 1.15
KRT39Q6A163 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT39Q6A163 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
KRT39Q6A163 AC231657.2-201ENST00000624556 255 ntBASIC22.21■■□□□ 1.15
KRT39Q6A163 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.21■■□□□ 1.15
KRT39Q6A163 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT39Q6A163 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC22.21■■□□□ 1.15
KRT39Q6A163 FP700111.2-201ENST00000619190 1892 ntBASIC22.21■■□□□ 1.15
KRT39Q6A163 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
KRT39Q6A163 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
KRT39Q6A163 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
KRT39Q6A163 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 METTL26-203ENST00000397664 604 ntTSL 2 BASIC22.2■■□□□ 1.14
KRT39Q6A163 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.2■■□□□ 1.14
KRT39Q6A163 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC22.2■■□□□ 1.14
KRT39Q6A163 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.2■■□□□ 1.14
KRT39Q6A163 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
KRT39Q6A163 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC22.2■■□□□ 1.14
KRT39Q6A163 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
KRT39Q6A163 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC22.19■■□□□ 1.14
KRT39Q6A163 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
KRT39Q6A163 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC22.19■■□□□ 1.14
KRT39Q6A163 CASP6-205ENST00000505486 538 ntTSL 4 BASIC22.19■■□□□ 1.14
KRT39Q6A163 AL137784.2-201ENST00000607332 1000 ntBASIC22.19■■□□□ 1.14
KRT39Q6A163 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC22.19■■□□□ 1.14
KRT39Q6A163 AC068338.2-201ENST00000563278 1430 ntBASIC22.19■■□□□ 1.14
KRT39Q6A163 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.19■■□□□ 1.14
KRT39Q6A163 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
KRT39Q6A163 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
KRT39Q6A163 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
KRT39Q6A163 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT39Q6A163 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT39Q6A163 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
KRT39Q6A163 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
KRT39Q6A163 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT39Q6A163 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC22.18■■□□□ 1.14
KRT39Q6A163 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
KRT39Q6A163 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT39Q6A163 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.18■■□□□ 1.14
KRT39Q6A163 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
KRT39Q6A163 AC004911.1-201ENST00000416316 871 ntBASIC22.18■■□□□ 1.14
KRT39Q6A163 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC22.18■■□□□ 1.14
KRT39Q6A163 PBX1-209ENST00000485769 834 ntTSL 2 BASIC22.18■■□□□ 1.14
KRT39Q6A163 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.18■■□□□ 1.14
KRT39Q6A163 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.18■■□□□ 1.14
KRT39Q6A163 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
KRT39Q6A163 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
KRT39Q6A163 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
KRT39Q6A163 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
KRT39Q6A163 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
KRT39Q6A163 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms