Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC28.76■■■□□ 2.19
MSH6P52701 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC28.76■■■□□ 2.19
MSH6P52701 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
MSH6P52701 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
MSH6P52701 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC28.76■■■□□ 2.19
MSH6P52701 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC28.76■■■□□ 2.19
MSH6P52701 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
MSH6P52701 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
MSH6P52701 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC28.75■■■□□ 2.19
MSH6P52701 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
MSH6P52701 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
MSH6P52701 KRT8P9-201ENST00000558927 1449 ntBASIC28.75■■■□□ 2.19
MSH6P52701 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
MSH6P52701 RER1-204ENST00000378518 522 ntTSL 3 BASIC28.75■■■□□ 2.19
MSH6P52701 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC28.75■■■□□ 2.19
MSH6P52701 DECR2-212ENST00000627716 352 ntTSL 2 BASIC28.75■■■□□ 2.19
MSH6P52701 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
MSH6P52701 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
MSH6P52701 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
MSH6P52701 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
MSH6P52701 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
MSH6P52701 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC28.74■■■□□ 2.19
MSH6P52701 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC28.74■■■□□ 2.19
MSH6P52701 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
MSH6P52701 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC28.74■■■□□ 2.19
MSH6P52701 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC28.74■■■□□ 2.19
MSH6P52701 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC28.74■■■□□ 2.19
MSH6P52701 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
MSH6P52701 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC28.73■■■□□ 2.19
MSH6P52701 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC28.73■■■□□ 2.19
MSH6P52701 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
MSH6P52701 AC087633.2-202ENST00000565166 1439 ntBASIC28.73■■■□□ 2.19
MSH6P52701 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC28.73■■■□□ 2.19
MSH6P52701 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
MSH6P52701 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
MSH6P52701 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC28.73■■■□□ 2.19
MSH6P52701 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC28.73■■■□□ 2.19
MSH6P52701 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
MSH6P52701 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
MSH6P52701 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC28.72■■■□□ 2.19
MSH6P52701 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
MSH6P52701 AL353807.1-201ENST00000427475 662 ntBASIC28.72■■■□□ 2.19
MSH6P52701 RBM17P1-201ENST00000453646 1190 ntBASIC28.72■■■□□ 2.19
MSH6P52701 RBM42-202ENST00000586618 771 ntTSL 3 BASIC28.72■■■□□ 2.19
MSH6P52701 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC28.72■■■□□ 2.19
MSH6P52701 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
MSH6P52701 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
MSH6P52701 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
MSH6P52701 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
MSH6P52701 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC28.71■■■□□ 2.19
MSH6P52701 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
MSH6P52701 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
MSH6P52701 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
MSH6P52701 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
MSH6P52701 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
MSH6P52701 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
MSH6P52701 HTR7P1-201ENST00000538670 1336 ntBASIC28.7■■■□□ 2.19
MSH6P52701 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC28.7■■■□□ 2.18
MSH6P52701 TERF1P1-201ENST00000311003 1181 ntBASIC28.7■■■□□ 2.18
MSH6P52701 AL390719.1-204ENST00000412397 1219 ntBASIC28.7■■■□□ 2.18
MSH6P52701 FAM197Y1-201ENST00000421178 764 ntBASIC28.7■■■□□ 2.18
MSH6P52701 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
MSH6P52701 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC28.7■■■□□ 2.18
MSH6P52701 GLDC-219ENST00000640208 420 ntTSL 2 BASIC28.7■■■□□ 2.18
MSH6P52701 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
MSH6P52701 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC28.7■■■□□ 2.18
MSH6P52701 SRI-203ENST00000419179 1307 ntTSL 2 BASIC28.7■■■□□ 2.18
MSH6P52701 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH6P52701 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH6P52701 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC28.69■■■□□ 2.18
MSH6P52701 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH6P52701 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH6P52701 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC28.69■■■□□ 2.18
MSH6P52701 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
MSH6P52701 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH6P52701 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
MSH6P52701 DUT-205ENST00000558813 769 ntTSL 2 BASIC28.69■■■□□ 2.18
MSH6P52701 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC28.69■■■□□ 2.18
MSH6P52701 Six3os1_6.1-201ENST00000620790 196 ntBASIC28.69■■■□□ 2.18
MSH6P52701 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH6P52701 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
MSH6P52701 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
MSH6P52701 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
MSH6P52701 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
MSH6P52701 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC28.68■■■□□ 2.18
MSH6P52701 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
MSH6P52701 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC28.68■■■□□ 2.18
MSH6P52701 NTF6B-201ENST00000591913 560 ntBASIC28.68■■■□□ 2.18
MSH6P52701 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC28.68■■■□□ 2.18
MSH6P52701 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
MSH6P52701 AC079598.2-202ENST00000546624 1451 ntBASIC28.68■■■□□ 2.18
MSH6P52701 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC28.68■■■□□ 2.18
MSH6P52701 MOK-233ENST00000524214 1539 ntTSL 2 BASIC28.68■■■□□ 2.18
MSH6P52701 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
MSH6P52701 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
MSH6P52701 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
MSH6P52701 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
MSH6P52701 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
MSH6P52701 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
MSH6P52701 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC28.67■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms