Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 RNH70YGR276C 1662 nt1.52□□□□□ -2.17
CUP9P41817 PIG2YIL045W 1617 nt1.52□□□□□ -2.17
CUP9P41817 RUD3YOR216C 1455 nt1.52□□□□□ -2.17
CUP9P41817 YCR081C-AYCR081C-A 237 nt1.52□□□□□ -2.17
CUP9P41817 MEI4YER044C-A 1227 nt1.52□□□□□ -2.17
CUP9P41817 YLR379WYLR379W 375 nt1.52□□□□□ -2.17
CUP9P41817 YML090WYML090W 387 nt1.52□□□□□ -2.17
CUP9P41817 ATG16YMR159C 453 nt1.52□□□□□ -2.17
CUP9P41817 COA6YMR244C-A 315 nt1.52□□□□□ -2.17
CUP9P41817 YNR068CYNR068C 819 nt1.52□□□□□ -2.17
CUP9P41817 PEP12YOR036W 867 nt1.52□□□□□ -2.17
CUP9P41817 TRZ1YKR079C 2517 nt1.52□□□□□ -2.17
CUP9P41817 VPS8YAL002W 3825 nt1.52□□□□□ -2.17
CUP9P41817 LHS1YKL073W 2646 nt1.52□□□□□ -2.17
CUP9P41817 REV1YOR346W 2958 nt1.51□□□□□ -2.17
CUP9P41817 NUR1YDL089W 1455 nt1.51□□□□□ -2.17
CUP9P41817 RTP1YMR185W 2946 nt1.51□□□□□ -2.17
CUP9P41817 PDR8YLR266C 2106 nt1.51□□□□□ -2.17
CUP9P41817 UBC9YDL064W 474 nt1.51□□□□□ -2.17
CUP9P41817 SNA4YDL123W 423 nt1.51□□□□□ -2.17
CUP9P41817 TVP15YDR100W 432 nt1.51□□□□□ -2.17
CUP9P41817 CBS2YDR197W 1170 nt1.51□□□□□ -2.17
CUP9P41817 VAB2YEL005C 849 nt1.51□□□□□ -2.17
CUP9P41817 YPT52YKR014C 705 nt1.51□□□□□ -2.17
CUP9P41817 RLP24YLR009W 600 nt1.51□□□□□ -2.17
CUP9P41817 CSI1YMR025W 888 nt1.51□□□□□ -2.17
CUP9P41817 YMR247W-AYMR247W-A 144 nt1.51□□□□□ -2.17
CUP9P41817 ATX1YNL259C 222 nt1.51□□□□□ -2.17
CUP9P41817 MED8YBR193C 672 nt1.51□□□□□ -2.17
CUP9P41817 IRC10YOL015W 1761 nt1.51□□□□□ -2.17
CUP9P41817 RRP6YOR001W 2202 nt1.51□□□□□ -2.17
CUP9P41817 ATG9YDL149W 2994 nt1.5□□□□□ -2.17
CUP9P41817 PMD1YER132C 5262 nt1.5□□□□□ -2.17
CUP9P41817 NPR1YNL183C 2373 nt1.5□□□□□ -2.17
CUP9P41817 MFB1YDR219C 1398 nt1.5□□□□□ -2.17
CUP9P41817 RSM23YGL129C 1353 nt1.5□□□□□ -2.17
CUP9P41817 YCR090CYCR090C 549 nt1.5□□□□□ -2.17
CUP9P41817 SHR3YDL212W 633 nt1.5□□□□□ -2.17
CUP9P41817 tT(UGU)HtT(UGU)H 72 nt1.5□□□□□ -2.17
CUP9P41817 VPS25YJR102C 609 nt1.5□□□□□ -2.17
CUP9P41817 YKL115CYKL115C 393 nt1.5□□□□□ -2.17
CUP9P41817 IRC13YOR235W 315 nt1.5□□□□□ -2.17
CUP9P41817 SRL4YPL033C 846 nt1.5□□□□□ -2.17
CUP9P41817 MEI5YPL121C 669 nt1.5□□□□□ -2.17
CUP9P41817 BUD2YKL092C 3315 nt1.5□□□□□ -2.17
CUP9P41817 SSP1YHR184W 1716 nt1.49□□□□□ -2.17
CUP9P41817 BRR2YER172C 6492 nt1.49□□□□□ -2.17
CUP9P41817 DAL5YJR152W 1632 nt1.49□□□□□ -2.17
CUP9P41817 RBK1YCR036W 1002 nt1.49□□□□□ -2.17
CUP9P41817 GUK1YDR454C 564 nt1.49□□□□□ -2.17
CUP9P41817 YHR073W-AYHR073W-A 177 nt1.49□□□□□ -2.17
CUP9P41817 CTK2YJL006C 972 nt1.49□□□□□ -2.17
CUP9P41817 YHC1YLR298C 696 nt1.49□□□□□ -2.17
CUP9P41817 YML094C-AYML094C-A 402 nt1.49□□□□□ -2.17
CUP9P41817 YMR144WYMR144W 1029 nt1.49□□□□□ -2.17
CUP9P41817 RRT16YNL105W 429 nt1.49□□□□□ -2.17
CUP9P41817 ARL1YBR164C 552 nt1.49□□□□□ -2.17
CUP9P41817 ECM5YMR176W 4236 nt1.49□□□□□ -2.17
CUP9P41817 MET18YIL128W 3099 nt1.48□□□□□ -2.17
CUP9P41817 CTF4YPR135W 2784 nt1.48□□□□□ -2.17
CUP9P41817 YCR099CYCR099C 468 nt1.48□□□□□ -2.17
CUP9P41817 YEL010WYEL010W 351 nt1.48□□□□□ -2.17
CUP9P41817 YMR306C-AYMR306C-A 390 nt1.48□□□□□ -2.17
CUP9P41817 YBR090CYBR090C 369 nt1.48□□□□□ -2.17
CUP9P41817 RTT101YJL047C 2529 nt1.48□□□□□ -2.17
CUP9P41817 VPH1YOR270C 2523 nt1.47□□□□□ -2.17
CUP9P41817 HSE1YHL002W 1359 nt1.47□□□□□ -2.17
CUP9P41817 HSL1YKL101W 4557 nt1.47□□□□□ -2.17
CUP9P41817 CHS1YNL192W 3396 nt1.47□□□□□ -2.17
CUP9P41817 SBE22YHR103W 2559 nt1.47□□□□□ -2.17
CUP9P41817 NCB2YDR397C 441 nt1.47□□□□□ -2.17
CUP9P41817 RPN9YDR427W 1182 nt1.47□□□□□ -2.17
CUP9P41817 YGL014C-AYGL014C-A 162 nt1.47□□□□□ -2.17
CUP9P41817 RPL11BYGR085C 525 nt1.47□□□□□ -2.17
CUP9P41817 GTR2YGR163W 1026 nt1.47□□□□□ -2.17
CUP9P41817 RPL16BYNL069C 597 nt1.47□□□□□ -2.17
CUP9P41817 YOR146WYOR146W 306 nt1.47□□□□□ -2.17
CUP9P41817 RPL11AYPR102C 525 nt1.47□□□□□ -2.17
CUP9P41817 CSH1YBR161W 1131 nt1.47□□□□□ -2.17
CUP9P41817 PSO2YMR137C 1986 nt1.47□□□□□ -2.17
CUP9P41817 SSF1YHR066W 1362 nt1.47□□□□□ -2.17
CUP9P41817 ESA1YOR244W 1338 nt1.46□□□□□ -2.18
CUP9P41817 CFT2YLR115W 2580 nt1.46□□□□□ -2.18
CUP9P41817 DCP2YNL118C 2913 nt1.46□□□□□ -2.18
CUP9P41817 GIC2YDR309C 1152 nt1.46□□□□□ -2.18
CUP9P41817 IRC4YDR540C 540 nt1.46□□□□□ -2.18
CUP9P41817 GRE2YOL151W 1029 nt1.46□□□□□ -2.18
CUP9P41817 APA1YCL050C 966 nt1.46□□□□□ -2.18
CUP9P41817 NIC96YFR002W 2520 nt1.46□□□□□ -2.18
CUP9P41817 PES4YFR023W 1836 nt1.45□□□□□ -2.18
CUP9P41817 TRL1YJL087C 2484 nt1.45□□□□□ -2.18
CUP9P41817 snR83snR83 306 nt1.45□□□□□ -2.18
CUP9P41817 YLR035C-AYLR035C-A 3468 nt1.45□□□□□ -2.18
CUP9P41817 VPS15YBR097W 4365 nt1.45□□□□□ -2.18
CUP9P41817 YNL144CYNL144C 2223 nt1.44□□□□□ -2.18
CUP9P41817 CHC1YGL206C 4962 nt1.44□□□□□ -2.18
CUP9P41817 HTD2YHR067W 843 nt1.44□□□□□ -2.18
CUP9P41817 CAP1YKL007W 807 nt1.44□□□□□ -2.18
CUP9P41817 CSE4YKL049C 690 nt1.44□□□□□ -2.18
CUP9P41817 YKR075W-AYKR075W-A 270 nt1.44□□□□□ -2.18
Retrieved 100 of 7,029 protein–RNA pairs in 30.9 ms