Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 AC026271.2-201ENST00000428091 497 ntBASIC20.61■□□□□ 0.89
TREX1Q9NSU2 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TREX1Q9NSU2 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 MYCNOS-205ENST00000641950 531 ntBASIC20.6■□□□□ 0.89
TREX1Q9NSU2 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 AC020907.5-201ENST00000624372 1936 ntBASIC20.6■□□□□ 0.89
TREX1Q9NSU2 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 AL121603.2-201ENST00000557373 2117 ntBASIC20.6■□□□□ 0.89
TREX1Q9NSU2 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TREX1Q9NSU2 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TREX1Q9NSU2 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.58■□□□□ 0.89
TREX1Q9NSU2 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TREX1Q9NSU2 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TREX1Q9NSU2 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TREX1Q9NSU2 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TREX1Q9NSU2 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TREX1Q9NSU2 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
TREX1Q9NSU2 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 KRT18P5-201ENST00000436075 1291 ntBASIC20.57■□□□□ 0.88
TREX1Q9NSU2 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TREX1Q9NSU2 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 MIR2861-201ENST00000636310 90 ntBASIC20.56■□□□□ 0.88
TREX1Q9NSU2 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TREX1Q9NSU2 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms