Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC007322.1-201ENST00000426983 750 ntBASIC22.57■■□□□ 1.2
PCIF1Q9H4Z3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22.57■■□□□ 1.2
PCIF1Q9H4Z3 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.57■■□□□ 1.2
PCIF1Q9H4Z3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.57■■□□□ 1.2
PCIF1Q9H4Z3 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.57■■□□□ 1.2
PCIF1Q9H4Z3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCIF1Q9H4Z3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCIF1Q9H4Z3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCIF1Q9H4Z3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PCIF1Q9H4Z3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 AC011484.1-201ENST00000377652 1995 ntBASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 AC068338.2-201ENST00000563278 1430 ntBASIC22.56■■□□□ 1.2
PCIF1Q9H4Z3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 AL591742.1-201ENST00000604433 565 ntBASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 AC016405.3-201ENST00000607710 860 ntBASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 AC231657.2-201ENST00000624556 255 ntBASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
PCIF1Q9H4Z3 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 AC007322.4-201ENST00000509611 723 ntBASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 AC006128.1-201ENST00000624704 1661 ntBASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.54■■□□□ 1.2
PCIF1Q9H4Z3 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 METTL26-203ENST00000397664 604 ntTSL 2 BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 AC007322.3-201ENST00000426526 701 ntBASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 RAP2CP1-201ENST00000605103 478 ntBASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
PCIF1Q9H4Z3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
PCIF1Q9H4Z3 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.19
PCIF1Q9H4Z3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
PCIF1Q9H4Z3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.51■■□□□ 1.19
PCIF1Q9H4Z3 AC026185.1-201ENST00000445748 174 ntBASIC22.51■■□□□ 1.19
PCIF1Q9H4Z3 CDV3P1-201ENST00000471403 739 ntBASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms