Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL12A1Q99715 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.22■□□□□ 0.51
COL12A1Q99715 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL12A1Q99715 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.22■□□□□ 0.51
COL12A1Q99715 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.22■□□□□ 0.51
COL12A1Q99715 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL12A1Q99715 AC003102.1-202ENST00000563394 1796 ntBASIC18.22■□□□□ 0.51
COL12A1Q99715 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL12A1Q99715 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL12A1Q99715 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.22■□□□□ 0.51
COL12A1Q99715 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL12A1Q99715 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
COL12A1Q99715 AL450487.1-201ENST00000426799 995 ntBASIC18.21■□□□□ 0.51
COL12A1Q99715 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.21■□□□□ 0.51
COL12A1Q99715 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.21■□□□□ 0.51
COL12A1Q99715 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.21■□□□□ 0.51
COL12A1Q99715 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.21■□□□□ 0.51
COL12A1Q99715 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 LINC01568-207ENST00000641790 1380 ntBASIC18.21■□□□□ 0.51
COL12A1Q99715 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.21■□□□□ 0.51
COL12A1Q99715 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.21■□□□□ 0.51
COL12A1Q99715 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.21■□□□□ 0.51
COL12A1Q99715 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.21■□□□□ 0.51
COL12A1Q99715 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.21■□□□□ 0.51
COL12A1Q99715 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL12A1Q99715 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.21■□□□□ 0.51
COL12A1Q99715 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.21■□□□□ 0.51
COL12A1Q99715 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.21■□□□□ 0.51
COL12A1Q99715 AC006011.2-201ENST00000621313 1158 ntBASIC18.21■□□□□ 0.51
COL12A1Q99715 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.21■□□□□ 0.51
COL12A1Q99715 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
COL12A1Q99715 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.21■□□□□ 0.51
COL12A1Q99715 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.21■□□□□ 0.5
COL12A1Q99715 AC137767.1-201ENST00000602918 1920 ntBASIC18.21■□□□□ 0.5
COL12A1Q99715 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL12A1Q99715 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL12A1Q99715 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.2■□□□□ 0.5
COL12A1Q99715 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.2■□□□□ 0.5
COL12A1Q99715 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL12A1Q99715 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL12A1Q99715 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL12A1Q99715 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL12A1Q99715 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.2■□□□□ 0.5
COL12A1Q99715 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.2■□□□□ 0.5
COL12A1Q99715 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
COL12A1Q99715 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
COL12A1Q99715 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.19■□□□□ 0.5
COL12A1Q99715 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
COL12A1Q99715 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL12A1Q99715 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.19■□□□□ 0.5
COL12A1Q99715 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL12A1Q99715 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
COL12A1Q99715 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL12A1Q99715 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.19■□□□□ 0.5
COL12A1Q99715 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
COL12A1Q99715 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.19■□□□□ 0.5
COL12A1Q99715 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL12A1Q99715 UNC93B2-201ENST00000285383 730 ntBASIC18.19■□□□□ 0.5
COL12A1Q99715 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL12A1Q99715 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL12A1Q99715 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL12A1Q99715 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL12A1Q99715 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL12A1Q99715 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL12A1Q99715 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL12A1Q99715 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL12A1Q99715 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL12A1Q99715 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
COL12A1Q99715 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
COL12A1Q99715 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL12A1Q99715 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL12A1Q99715 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL12A1Q99715 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.18■□□□□ 0.5
COL12A1Q99715 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL12A1Q99715 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.18■□□□□ 0.5
COL12A1Q99715 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL12A1Q99715 AP000347.1-202ENST00000435868 847 ntBASIC18.18■□□□□ 0.5
COL12A1Q99715 SLC25A3P1-201ENST00000443844 931 ntBASIC18.18■□□□□ 0.5
COL12A1Q99715 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL12A1Q99715 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.18■□□□□ 0.5
COL12A1Q99715 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.18■□□□□ 0.5
COL12A1Q99715 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.17■□□□□ 0.5
COL12A1Q99715 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL12A1Q99715 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 AC008175.2-201ENST00000612840 297 ntBASIC18.17■□□□□ 0.5
COL12A1Q99715 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL12A1Q99715 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms