Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKNOX1P55347 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKNOX1P55347 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.18■□□□□ 0.82
PKNOX1P55347 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PKNOX1P55347 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.18■□□□□ 0.82
PKNOX1P55347 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.18■□□□□ 0.82
PKNOX1P55347 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.18■□□□□ 0.82
PKNOX1P55347 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.17■□□□□ 0.82
PKNOX1P55347 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PKNOX1P55347 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.17■□□□□ 0.82
PKNOX1P55347 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.17■□□□□ 0.82
PKNOX1P55347 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PKNOX1P55347 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PKNOX1P55347 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
PKNOX1P55347 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PKNOX1P55347 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PKNOX1P55347 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PKNOX1P55347 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.17■□□□□ 0.82
PKNOX1P55347 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PKNOX1P55347 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.17■□□□□ 0.82
PKNOX1P55347 AL358852.1-201ENST00000623174 1268 ntBASIC20.17■□□□□ 0.82
PKNOX1P55347 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PKNOX1P55347 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PKNOX1P55347 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
PKNOX1P55347 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
PKNOX1P55347 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.16■□□□□ 0.82
PKNOX1P55347 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.16■□□□□ 0.82
PKNOX1P55347 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.16■□□□□ 0.82
PKNOX1P55347 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PKNOX1P55347 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PKNOX1P55347 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PKNOX1P55347 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PKNOX1P55347 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PKNOX1P55347 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PKNOX1P55347 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.15■□□□□ 0.82
PKNOX1P55347 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.15■□□□□ 0.82
PKNOX1P55347 AL139246.5-201ENST00000606645 996 ntBASIC20.15■□□□□ 0.82
PKNOX1P55347 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.15■□□□□ 0.82
PKNOX1P55347 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PKNOX1P55347 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PKNOX1P55347 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.15■□□□□ 0.82
PKNOX1P55347 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.15■□□□□ 0.82
PKNOX1P55347 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PKNOX1P55347 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
PKNOX1P55347 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.15■□□□□ 0.82
PKNOX1P55347 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PKNOX1P55347 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PKNOX1P55347 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
PKNOX1P55347 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PKNOX1P55347 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
PKNOX1P55347 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PKNOX1P55347 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PKNOX1P55347 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 AC061975.6-201ENST00000579045 1553 ntBASIC20.14■□□□□ 0.81
PKNOX1P55347 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
PKNOX1P55347 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.14■□□□□ 0.81
PKNOX1P55347 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.14■□□□□ 0.81
PKNOX1P55347 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
PKNOX1P55347 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.14■□□□□ 0.81
PKNOX1P55347 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PKNOX1P55347 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 AC007225.1-201ENST00000566331 1836 ntBASIC20.13■□□□□ 0.81
PKNOX1P55347 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.13■□□□□ 0.81
PKNOX1P55347 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
PKNOX1P55347 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
PKNOX1P55347 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.13■□□□□ 0.81
PKNOX1P55347 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PKNOX1P55347 POU5F1P4-201ENST00000413175 1085 ntBASIC20.13■□□□□ 0.81
PKNOX1P55347 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.13■□□□□ 0.81
PKNOX1P55347 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.13■□□□□ 0.81
PKNOX1P55347 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PKNOX1P55347 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PKNOX1P55347 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
PKNOX1P55347 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms