Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RXRBP28702 AL139125.2-201ENST00000623134 1869 ntBASIC27.46■■□□□ 1.99
RXRBP28702 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RXRBP28702 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
RXRBP28702 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RXRBP28702 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC27.45■■□□□ 1.99
RXRBP28702 MED25-212ENST00000618715 1467 ntTSL 5 BASIC27.45■■□□□ 1.99
RXRBP28702 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
RXRBP28702 COPE-203ENST00000351079 907 ntTSL 2 BASIC27.45■■□□□ 1.98
RXRBP28702 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC27.45■■□□□ 1.98
RXRBP28702 AC063952.2-201ENST00000498792 1227 ntBASIC27.45■■□□□ 1.98
RXRBP28702 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC27.45■■□□□ 1.98
RXRBP28702 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC27.45■■□□□ 1.98
RXRBP28702 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC27.45■■□□□ 1.98
RXRBP28702 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
RXRBP28702 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
RXRBP28702 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RXRBP28702 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RXRBP28702 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
RXRBP28702 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RXRBP28702 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RXRBP28702 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RXRBP28702 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC27.44■■□□□ 1.98
RXRBP28702 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC27.44■■□□□ 1.98
RXRBP28702 HES2-206ENST00000489730 730 ntTSL 2 BASIC27.44■■□□□ 1.98
RXRBP28702 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC27.44■■□□□ 1.98
RXRBP28702 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC27.44■■□□□ 1.98
RXRBP28702 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RXRBP28702 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
RXRBP28702 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
RXRBP28702 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC27.43■■□□□ 1.98
RXRBP28702 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
RXRBP28702 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RXRBP28702 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
RXRBP28702 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RXRBP28702 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC27.43■■□□□ 1.98
RXRBP28702 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC27.43■■□□□ 1.98
RXRBP28702 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC27.43■■□□□ 1.98
RXRBP28702 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC27.43■■□□□ 1.98
RXRBP28702 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC27.43■■□□□ 1.98
RXRBP28702 GPALPP1-207ENST00000611650 899 ntBASIC27.43■■□□□ 1.98
RXRBP28702 AP000550.4-202ENST00000639755 178 ntBASIC27.43■■□□□ 1.98
RXRBP28702 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RXRBP28702 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RXRBP28702 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
RXRBP28702 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC27.43■■□□□ 1.98
RXRBP28702 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
RXRBP28702 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
RXRBP28702 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC27.42■■□□□ 1.98
RXRBP28702 RER1-204ENST00000378518 522 ntTSL 3 BASIC27.42■■□□□ 1.98
RXRBP28702 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC27.42■■□□□ 1.98
RXRBP28702 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC27.42■■□□□ 1.98
RXRBP28702 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC27.42■■□□□ 1.98
RXRBP28702 AL390719.1-204ENST00000412397 1219 ntBASIC27.42■■□□□ 1.98
RXRBP28702 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC27.42■■□□□ 1.98
RXRBP28702 CLN6-204ENST00000564752 900 ntTSL 3 BASIC27.42■■□□□ 1.98
RXRBP28702 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC27.42■■□□□ 1.98
RXRBP28702 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC27.42■■□□□ 1.98
RXRBP28702 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC27.42■■□□□ 1.98
RXRBP28702 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC27.42■■□□□ 1.98
RXRBP28702 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RXRBP28702 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC27.41■■□□□ 1.98
RXRBP28702 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RXRBP28702 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC27.41■■□□□ 1.98
RXRBP28702 AL031133.1-201ENST00000406807 723 ntBASIC27.41■■□□□ 1.98
RXRBP28702 COPS8-203ENST00000409334 794 ntTSL 5 BASIC27.41■■□□□ 1.98
RXRBP28702 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC27.41■■□□□ 1.98
RXRBP28702 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC27.41■■□□□ 1.98
RXRBP28702 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
RXRBP28702 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC27.4■■□□□ 1.98
RXRBP28702 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC27.4■■□□□ 1.98
RXRBP28702 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC27.4■■□□□ 1.98
RXRBP28702 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC27.4■■□□□ 1.98
RXRBP28702 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC27.4■■□□□ 1.98
RXRBP28702 MYC-208ENST00000641036 567 ntBASIC27.4■■□□□ 1.98
RXRBP28702 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC27.4■■□□□ 1.98
RXRBP28702 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
RXRBP28702 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC27.4■■□□□ 1.98
RXRBP28702 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
RXRBP28702 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RXRBP28702 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
RXRBP28702 THRA-202ENST00000394121 2260 ntTSL 2 BASIC27.39■■□□□ 1.98
RXRBP28702 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
RXRBP28702 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
RXRBP28702 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
RXRBP28702 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
RXRBP28702 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
RXRBP28702 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
RXRBP28702 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC27.39■■□□□ 1.98
RXRBP28702 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
RXRBP28702 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC27.39■■□□□ 1.98
RXRBP28702 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC27.39■■□□□ 1.98
RXRBP28702 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC27.39■■□□□ 1.98
RXRBP28702 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC27.39■■□□□ 1.98
RXRBP28702 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC27.39■■□□□ 1.98
RXRBP28702 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
RXRBP28702 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
RXRBP28702 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
RXRBP28702 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
RXRBP28702 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms