Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.58■■□□□ 1.05
VCANP13611 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VCANP13611 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VCANP13611 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.58■■□□□ 1.04
VCANP13611 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
VCANP13611 AL031133.1-201ENST00000406807 723 ntBASIC21.58■■□□□ 1.04
VCANP13611 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.58■■□□□ 1.04
VCANP13611 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.58■■□□□ 1.04
VCANP13611 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
VCANP13611 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VCANP13611 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VCANP13611 AL355355.2-201ENST00000442321 338 ntBASIC21.57■■□□□ 1.04
VCANP13611 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.57■■□□□ 1.04
VCANP13611 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VCANP13611 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VCANP13611 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
VCANP13611 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VCANP13611 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VCANP13611 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VCANP13611 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VCANP13611 AC246785.2-201ENST00000432512 513 ntBASIC21.57■■□□□ 1.04
VCANP13611 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.57■■□□□ 1.04
VCANP13611 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.57■■□□□ 1.04
VCANP13611 AC061975.6-201ENST00000579045 1553 ntBASIC21.57■■□□□ 1.04
VCANP13611 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VCANP13611 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.56■■□□□ 1.04
VCANP13611 AL390955.1-201ENST00000428694 934 ntBASIC21.56■■□□□ 1.04
VCANP13611 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.56■■□□□ 1.04
VCANP13611 AC110285.5-201ENST00000611501 352 ntBASIC21.56■■□□□ 1.04
VCANP13611 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VCANP13611 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.56■■□□□ 1.04
VCANP13611 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.56■■□□□ 1.04
VCANP13611 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.56■■□□□ 1.04
VCANP13611 AP000550.4-202ENST00000639755 178 ntBASIC21.56■■□□□ 1.04
VCANP13611 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VCANP13611 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VCANP13611 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VCANP13611 HCG4P8-203ENST00000443049 980 ntBASIC21.55■■□□□ 1.04
VCANP13611 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VCANP13611 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VCANP13611 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VCANP13611 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
VCANP13611 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.55■■□□□ 1.04
VCANP13611 KRASP1-201ENST00000407852 552 ntBASIC21.55■■□□□ 1.04
VCANP13611 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.55■■□□□ 1.04
VCANP13611 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.55■■□□□ 1.04
VCANP13611 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
VCANP13611 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.54■■□□□ 1.04
VCANP13611 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VCANP13611 LINC00526-201ENST00000581067 1875 ntBASIC21.54■■□□□ 1.04
VCANP13611 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VCANP13611 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.54■■□□□ 1.04
VCANP13611 AC022616.7-201ENST00000525383 220 ntBASIC21.54■■□□□ 1.04
VCANP13611 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.54■■□□□ 1.04
VCANP13611 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
VCANP13611 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.54■■□□□ 1.04
VCANP13611 AC120498.8-201ENST00000614275 531 ntBASIC21.54■■□□□ 1.04
VCANP13611 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.54■■□□□ 1.04
VCANP13611 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCANP13611 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.53■■□□□ 1.04
VCANP13611 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.53■■□□□ 1.04
VCANP13611 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCANP13611 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
VCANP13611 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.53■■□□□ 1.04
VCANP13611 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCANP13611 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCANP13611 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
VCANP13611 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.53■■□□□ 1.04
VCANP13611 AC243732.1-201ENST00000612648 864 ntBASIC21.53■■□□□ 1.04
VCANP13611 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCANP13611 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCANP13611 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCANP13611 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.53■■□□□ 1.04
VCANP13611 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VCANP13611 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VCANP13611 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.53■■□□□ 1.04
VCANP13611 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VCANP13611 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCANP13611 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.52■■□□□ 1.04
VCANP13611 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.52■■□□□ 1.04
VCANP13611 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCANP13611 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.52■■□□□ 1.04
VCANP13611 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VCANP13611 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VCANP13611 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCANP13611 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCANP13611 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VCANP13611 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VCANP13611 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
VCANP13611 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.52■■□□□ 1.03
VCANP13611 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCANP13611 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
VCANP13611 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCANP13611 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCANP13611 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCANP13611 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCANP13611 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.51■■□□□ 1.03
VCANP13611 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.51■■□□□ 1.03
VCANP13611 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCANP13611 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms