Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TPM1P09493 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TPM1P09493 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TPM1P09493 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TPM1P09493 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC22.65■■□□□ 1.22
TPM1P09493 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC22.65■■□□□ 1.22
TPM1P09493 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
TPM1P09493 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
TPM1P09493 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TPM1P09493 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC22.65■■□□□ 1.22
TPM1P09493 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
TPM1P09493 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TPM1P09493 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TPM1P09493 BX842568.3-201ENST00000418104 571 ntBASIC22.64■■□□□ 1.21
TPM1P09493 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC22.64■■□□□ 1.21
TPM1P09493 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.64■■□□□ 1.21
TPM1P09493 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
TPM1P09493 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
TPM1P09493 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC22.64■■□□□ 1.21
TPM1P09493 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC22.64■■□□□ 1.21
TPM1P09493 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22.64■■□□□ 1.21
TPM1P09493 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC22.64■■□□□ 1.21
TPM1P09493 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TPM1P09493 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TPM1P09493 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.63■■□□□ 1.21
TPM1P09493 PXK-203ENST00000383715 1756 ntTSL 5 BASIC22.63■■□□□ 1.21
TPM1P09493 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TPM1P09493 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.63■■□□□ 1.21
TPM1P09493 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TPM1P09493 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
TPM1P09493 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TPM1P09493 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
TPM1P09493 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.63■■□□□ 1.21
TPM1P09493 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
TPM1P09493 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
TPM1P09493 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
TPM1P09493 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
TPM1P09493 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
TPM1P09493 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.63■■□□□ 1.21
TPM1P09493 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
TPM1P09493 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TPM1P09493 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
TPM1P09493 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TPM1P09493 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TPM1P09493 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TPM1P09493 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC22.62■■□□□ 1.21
TPM1P09493 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
TPM1P09493 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TPM1P09493 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
TPM1P09493 AL356441.2-201ENST00000443009 864 ntBASIC22.62■■□□□ 1.21
TPM1P09493 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.62■■□□□ 1.21
TPM1P09493 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.62■■□□□ 1.21
TPM1P09493 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TPM1P09493 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TPM1P09493 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TPM1P09493 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
TPM1P09493 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
TPM1P09493 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.61■■□□□ 1.21
TPM1P09493 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC22.61■■□□□ 1.21
TPM1P09493 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC22.61■■□□□ 1.21
TPM1P09493 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
TPM1P09493 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC22.61■■□□□ 1.21
TPM1P09493 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TPM1P09493 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
TPM1P09493 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.6■■□□□ 1.21
TPM1P09493 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
TPM1P09493 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC22.6■■□□□ 1.21
TPM1P09493 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.6■■□□□ 1.21
TPM1P09493 AC133561.4-201ENST00000566112 224 ntBASIC22.6■■□□□ 1.21
TPM1P09493 AC126544.1-201ENST00000580842 1059 ntBASIC22.6■■□□□ 1.21
TPM1P09493 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC22.6■■□□□ 1.21
TPM1P09493 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.6■■□□□ 1.21
TPM1P09493 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.6■■□□□ 1.21
TPM1P09493 FP700111.2-201ENST00000619190 1892 ntBASIC22.6■■□□□ 1.21
TPM1P09493 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
TPM1P09493 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
TPM1P09493 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
TPM1P09493 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
TPM1P09493 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TPM1P09493 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.59■■□□□ 1.21
TPM1P09493 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms