Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SPTA1P02549 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.79■□□□□ 0.6
SPTA1P02549 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SPTA1P02549 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SPTA1P02549 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
SPTA1P02549 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SPTA1P02549 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SPTA1P02549 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.78■□□□□ 0.6
SPTA1P02549 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.78■□□□□ 0.6
SPTA1P02549 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.78■□□□□ 0.6
SPTA1P02549 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SPTA1P02549 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.78■□□□□ 0.6
SPTA1P02549 AC113410.3-201ENST00000623366 203 ntBASIC18.78■□□□□ 0.6
SPTA1P02549 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.78■□□□□ 0.6
SPTA1P02549 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SPTA1P02549 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SPTA1P02549 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SPTA1P02549 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.78■□□□□ 0.6
SPTA1P02549 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.78■□□□□ 0.6
SPTA1P02549 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SPTA1P02549 UPK3BP1-201ENST00000428678 509 ntBASIC18.78■□□□□ 0.6
SPTA1P02549 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
SPTA1P02549 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.77■□□□□ 0.6
SPTA1P02549 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.77■□□□□ 0.6
SPTA1P02549 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SPTA1P02549 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SPTA1P02549 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SPTA1P02549 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SPTA1P02549 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SPTA1P02549 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SPTA1P02549 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SPTA1P02549 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.77■□□□□ 0.6
SPTA1P02549 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SPTA1P02549 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.77■□□□□ 0.6
SPTA1P02549 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.77■□□□□ 0.6
SPTA1P02549 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.77■□□□□ 0.6
SPTA1P02549 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SPTA1P02549 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SPTA1P02549 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SPTA1P02549 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SPTA1P02549 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.77■□□□□ 0.59
SPTA1P02549 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
SPTA1P02549 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.76■□□□□ 0.59
SPTA1P02549 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SPTA1P02549 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.76■□□□□ 0.59
SPTA1P02549 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.76■□□□□ 0.59
SPTA1P02549 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SPTA1P02549 AC105020.6-201ENST00000621523 1217 ntBASIC18.76■□□□□ 0.59
SPTA1P02549 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SPTA1P02549 CREM-210ENST00000374721 2020 ntTSL 5 BASIC18.76■□□□□ 0.59
SPTA1P02549 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SPTA1P02549 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.76■□□□□ 0.59
SPTA1P02549 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.76■□□□□ 0.59
SPTA1P02549 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.76■□□□□ 0.59
SPTA1P02549 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SPTA1P02549 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SPTA1P02549 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SPTA1P02549 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SPTA1P02549 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SPTA1P02549 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.76■□□□□ 0.59
SPTA1P02549 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.76■□□□□ 0.59
SPTA1P02549 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SPTA1P02549 KRT18P22-201ENST00000402024 1347 ntBASIC18.75■□□□□ 0.59
SPTA1P02549 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.75■□□□□ 0.59
SPTA1P02549 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.75■□□□□ 0.59
SPTA1P02549 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SPTA1P02549 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SPTA1P02549 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.75■□□□□ 0.59
SPTA1P02549 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SPTA1P02549 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.75■□□□□ 0.59
SPTA1P02549 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SPTA1P02549 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SPTA1P02549 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SPTA1P02549 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SPTA1P02549 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.75■□□□□ 0.59
SPTA1P02549 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SPTA1P02549 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.75■□□□□ 0.59
SPTA1P02549 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.75■□□□□ 0.59
SPTA1P02549 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SPTA1P02549 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SPTA1P02549 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.75■□□□□ 0.59
SPTA1P02549 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SPTA1P02549 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.74■□□□□ 0.59
SPTA1P02549 C11orf96-202ENST00000528572 1834 ntBASIC18.74■□□□□ 0.59
SPTA1P02549 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.74■□□□□ 0.59
SPTA1P02549 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SPTA1P02549 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.74■□□□□ 0.59
SPTA1P02549 AC091799.1-201ENST00000422823 811 ntBASIC18.74■□□□□ 0.59
SPTA1P02549 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.74■□□□□ 0.59
SPTA1P02549 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
SPTA1P02549 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms