Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.61■□□□□ 0.73
CPSF4O95639 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 TPRG1LP1-201ENST00000598702 760 ntBASIC19.61■□□□□ 0.73
CPSF4O95639 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CPSF4O95639 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 AIRN-201ENST00000601203 4374 ntBASIC19.61■□□□□ 0.73
CPSF4O95639 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CPSF4O95639 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CPSF4O95639 FP700111.2-201ENST00000619190 1892 ntBASIC19.6■□□□□ 0.73
CPSF4O95639 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.6■□□□□ 0.73
CPSF4O95639 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.6■□□□□ 0.73
CPSF4O95639 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CPSF4O95639 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CPSF4O95639 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.6■□□□□ 0.73
CPSF4O95639 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CPSF4O95639 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.6■□□□□ 0.73
CPSF4O95639 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.6■□□□□ 0.73
CPSF4O95639 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.6■□□□□ 0.73
CPSF4O95639 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CPSF4O95639 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CPSF4O95639 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CPSF4O95639 AC027702.1-201ENST00000563810 1770 ntBASIC19.6■□□□□ 0.73
CPSF4O95639 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CPSF4O95639 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4O95639 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CPSF4O95639 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4O95639 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.59■□□□□ 0.73
CPSF4O95639 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4O95639 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4O95639 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4O95639 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CPSF4O95639 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.59■□□□□ 0.73
CPSF4O95639 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.59■□□□□ 0.73
CPSF4O95639 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.59■□□□□ 0.73
CPSF4O95639 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.59■□□□□ 0.73
CPSF4O95639 AL358852.1-201ENST00000623174 1268 ntBASIC19.59■□□□□ 0.73
CPSF4O95639 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4O95639 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CPSF4O95639 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.59■□□□□ 0.73
CPSF4O95639 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CPSF4O95639 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4O95639 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CPSF4O95639 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CPSF4O95639 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CPSF4O95639 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CPSF4O95639 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CPSF4O95639 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.58■□□□□ 0.73
CPSF4O95639 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CPSF4O95639 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
CPSF4O95639 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CPSF4O95639 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CPSF4O95639 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.58■□□□□ 0.72
CPSF4O95639 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CPSF4O95639 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CPSF4O95639 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CPSF4O95639 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CPSF4O95639 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CPSF4O95639 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CPSF4O95639 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4O95639 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4O95639 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
CPSF4O95639 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.57■□□□□ 0.72
CPSF4O95639 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4O95639 AL391422.3-201ENST00000603791 2761 ntBASIC19.57■□□□□ 0.72
CPSF4O95639 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CPSF4O95639 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CPSF4O95639 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.57■□□□□ 0.72
CPSF4O95639 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4O95639 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4O95639 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4O95639 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.57■□□□□ 0.72
CPSF4O95639 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
CPSF4O95639 AC079140.4-201ENST00000507448 529 ntBASIC19.57■□□□□ 0.72
CPSF4O95639 AC008175.2-201ENST00000612840 297 ntBASIC19.57■□□□□ 0.72
CPSF4O95639 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.57■□□□□ 0.72
CPSF4O95639 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.57■□□□□ 0.72
CPSF4O95639 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4O95639 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CPSF4O95639 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.56■□□□□ 0.72
CPSF4O95639 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CPSF4O95639 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.56■□□□□ 0.72
CPSF4O95639 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.56■□□□□ 0.72
CPSF4O95639 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CPSF4O95639 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms