Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
SGCEO43556 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.17■□□□□ 0.5
SGCEO43556 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SGCEO43556 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SGCEO43556 AC245052.3-201ENST00000450182 901 ntBASIC18.17■□□□□ 0.5
SGCEO43556 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.17■□□□□ 0.5
SGCEO43556 SLC7A5P2-201ENST00000553010 536 ntBASIC18.17■□□□□ 0.5
SGCEO43556 NTF6G-201ENST00000591094 616 ntBASIC18.17■□□□□ 0.5
SGCEO43556 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SGCEO43556 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SGCEO43556 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SGCEO43556 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SGCEO43556 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.17■□□□□ 0.5
SGCEO43556 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SGCEO43556 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SGCEO43556 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SGCEO43556 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SGCEO43556 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SGCEO43556 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SGCEO43556 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SGCEO43556 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.16■□□□□ 0.5
SGCEO43556 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SGCEO43556 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.16■□□□□ 0.5
SGCEO43556 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.16■□□□□ 0.5
SGCEO43556 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SGCEO43556 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SGCEO43556 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.16■□□□□ 0.5
SGCEO43556 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.15■□□□□ 0.5
SGCEO43556 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.15■□□□□ 0.5
SGCEO43556 AC121338.2-201ENST00000622535 1744 ntBASIC18.15■□□□□ 0.5
SGCEO43556 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.15■□□□□ 0.5
SGCEO43556 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.15■□□□□ 0.5
SGCEO43556 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.15■□□□□ 0.5
SGCEO43556 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.15■□□□□ 0.5
SGCEO43556 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.15■□□□□ 0.5
SGCEO43556 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SGCEO43556 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SGCEO43556 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.14■□□□□ 0.5
SGCEO43556 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SGCEO43556 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SGCEO43556 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.14■□□□□ 0.49
SGCEO43556 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.14■□□□□ 0.49
SGCEO43556 RARRES2P6-201ENST00000567333 442 ntBASIC18.14■□□□□ 0.49
SGCEO43556 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 KRT18P61-201ENST00000585825 1298 ntBASIC18.14■□□□□ 0.49
SGCEO43556 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SGCEO43556 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SGCEO43556 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.13■□□□□ 0.49
SGCEO43556 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.13■□□□□ 0.49
SGCEO43556 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.13■□□□□ 0.49
SGCEO43556 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SGCEO43556 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SGCEO43556 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SGCEO43556 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 PLK5-205ENST00000642079 1969 ntBASIC18.13■□□□□ 0.49
SGCEO43556 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.13■□□□□ 0.49
SGCEO43556 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SGCEO43556 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.13■□□□□ 0.49
SGCEO43556 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SGCEO43556 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.12■□□□□ 0.49
SGCEO43556 AC006128.1-201ENST00000624704 1661 ntBASIC18.12■□□□□ 0.49
SGCEO43556 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.12■□□□□ 0.49
SGCEO43556 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.12■□□□□ 0.49
SGCEO43556 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SGCEO43556 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.12■□□□□ 0.49
SGCEO43556 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms