Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMARCAL1Q9NZC9 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 AC087289.5-201ENST00000586076 3175 ntBASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 AC133561.4-201ENST00000566112 224 ntBASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 AC135279.3-201ENST00000610945 1311 ntBASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SMARCAL1Q9NZC9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 AC055733.4-201ENST00000638462 1354 ntBASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 PBX2P1-201ENST00000493219 1291 ntBASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 MIR4767-201ENST00000582827 78 ntBASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.74■■□□□ 1.07
SMARCAL1Q9NZC9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMARCAL1Q9NZC9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 AC110285.6-201ENST00000617652 491 ntBASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.72■■□□□ 1.07
SMARCAL1Q9NZC9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.71■■□□□ 1.07
SMARCAL1Q9NZC9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCAL1Q9NZC9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms