Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
SCN3AQ9NY46 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 AC006970.2-201ENST00000450065 779 ntBASIC19.61■□□□□ 0.73
SCN3AQ9NY46 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN3AQ9NY46 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN3AQ9NY46 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 AL162412.1-201ENST00000567129 965 ntBASIC19.59■□□□□ 0.73
SCN3AQ9NY46 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 NCF1B-203ENST00000435988 1254 ntBASIC19.59■□□□□ 0.73
SCN3AQ9NY46 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 MKRN4P-201ENST00000444706 1521 ntBASIC19.59■□□□□ 0.73
SCN3AQ9NY46 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SCN3AQ9NY46 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.58■□□□□ 0.73
SCN3AQ9NY46 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SCN3AQ9NY46 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SCN3AQ9NY46 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SCN3AQ9NY46 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SCN3AQ9NY46 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SCN3AQ9NY46 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.58■□□□□ 0.72
SCN3AQ9NY46 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.58■□□□□ 0.72
SCN3AQ9NY46 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.58■□□□□ 0.72
SCN3AQ9NY46 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SCN3AQ9NY46 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.58■□□□□ 0.72
SCN3AQ9NY46 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 AL049796.1-201ENST00000565336 1766 ntBASIC19.57■□□□□ 0.72
SCN3AQ9NY46 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 AC098934.4-201ENST00000564127 592 ntBASIC19.57■□□□□ 0.72
SCN3AQ9NY46 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 AC005181.1-201ENST00000604782 1256 ntBASIC19.57■□□□□ 0.72
SCN3AQ9NY46 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SCN3AQ9NY46 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms