Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CPNE1Q99829 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPNE1Q99829 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPNE1Q99829 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CPNE1Q99829 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPNE1Q99829 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.66■□□□□ 0.9
CPNE1Q99829 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.66■□□□□ 0.9
CPNE1Q99829 KRT87P-202ENST00000534226 1464 ntBASIC20.66■□□□□ 0.9
CPNE1Q99829 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CPNE1Q99829 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CPNE1Q99829 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.66■□□□□ 0.9
CPNE1Q99829 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPNE1Q99829 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CPNE1Q99829 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPNE1Q99829 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.65■□□□□ 0.9
CPNE1Q99829 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.65■□□□□ 0.9
CPNE1Q99829 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.65■□□□□ 0.9
CPNE1Q99829 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.65■□□□□ 0.9
CPNE1Q99829 AC079140.4-201ENST00000507448 529 ntBASIC20.65■□□□□ 0.9
CPNE1Q99829 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.65■□□□□ 0.9
CPNE1Q99829 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CPNE1Q99829 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CPNE1Q99829 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.65■□□□□ 0.9
CPNE1Q99829 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
CPNE1Q99829 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.64■□□□□ 0.9
CPNE1Q99829 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.64■□□□□ 0.9
CPNE1Q99829 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CPNE1Q99829 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CPNE1Q99829 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CPNE1Q99829 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPNE1Q99829 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
CPNE1Q99829 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
CPNE1Q99829 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPNE1Q99829 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.64■□□□□ 0.89
CPNE1Q99829 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.64■□□□□ 0.89
CPNE1Q99829 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CPNE1Q99829 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPNE1Q99829 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPNE1Q99829 AL139246.5-201ENST00000606645 996 ntBASIC20.64■□□□□ 0.89
CPNE1Q99829 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPNE1Q99829 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPNE1Q99829 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CPNE1Q99829 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CPNE1Q99829 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPNE1Q99829 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
CPNE1Q99829 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CPNE1Q99829 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.63■□□□□ 0.89
CPNE1Q99829 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CPNE1Q99829 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.63■□□□□ 0.89
CPNE1Q99829 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.63■□□□□ 0.89
CPNE1Q99829 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.63■□□□□ 0.89
CPNE1Q99829 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.63■□□□□ 0.89
CPNE1Q99829 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.63■□□□□ 0.89
CPNE1Q99829 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CPNE1Q99829 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPNE1Q99829 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CPNE1Q99829 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.63■□□□□ 0.89
CPNE1Q99829 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
CPNE1Q99829 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.62■□□□□ 0.89
CPNE1Q99829 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 MIR6084-201ENST00000622012 110 ntBASIC20.62■□□□□ 0.89
CPNE1Q99829 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPNE1Q99829 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CPNE1Q99829 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
CPNE1Q99829 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CPNE1Q99829 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CPNE1Q99829 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPNE1Q99829 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CPNE1Q99829 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPNE1Q99829 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms