Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28AQ8IWP9 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 AC011270.2-201ENST00000624293 2550 ntBASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28AQ8IWP9 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
CCDC28AQ8IWP9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.34
CCDC28AQ8IWP9 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
CCDC28AQ8IWP9 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC28AQ8IWP9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC28AQ8IWP9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 AL592293.1-201ENST00000502889 1188 ntBASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28AQ8IWP9 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 AL139384.1-201ENST00000612143 3047 ntBASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28AQ8IWP9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms