Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 AC092118.2-201ENST00000613495 667 ntBASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SH3RF1Q7Z6J0 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 AL158047.1-201ENST00000445918 881 ntBASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SH3RF1Q7Z6J0 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 AC016405.3-201ENST00000607710 860 ntBASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SH3RF1Q7Z6J0 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.71■■□□□ 1.39
SH3RF1Q7Z6J0 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.39
SH3RF1Q7Z6J0 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
SH3RF1Q7Z6J0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 BX276092.2-201ENST00000417668 665 ntBASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 RPS2P4-201ENST00000476944 856 ntBASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 AC142381.4-202ENST00000563973 229 ntBASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 OR10C1-204ENST00000622521 1039 ntBASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SH3RF1Q7Z6J0 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms