Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.69■□□□□ 0.58
RNFT1Q5M7Z0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNFT1Q5M7Z0 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNFT1Q5M7Z0 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RNFT1Q5M7Z0 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 AC116050.2-201ENST00000612102 1779 ntBASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 AC128676.1-201ENST00000454392 318 ntBASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 AC026366.1-201ENST00000488803 879 ntBASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 AC093827.2-201ENST00000512654 315 ntBASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNFT1Q5M7Z0 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 AP003097.1-201ENST00000530657 1135 ntBASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNFT1Q5M7Z0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 GCSHP5-201ENST00000443090 522 ntBASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 AC008403.3-201ENST00000598924 454 ntBASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNFT1Q5M7Z0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 AC060766.5-201ENST00000590539 871 ntBASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 HLA-B-256ENST00000639848 1089 ntBASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 AC073648.6-201ENST00000641589 218 ntBASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.65■□□□□ 0.58
RNFT1Q5M7Z0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.64■□□□□ 0.58
RNFT1Q5M7Z0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.58
RNFT1Q5M7Z0 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RNFT1Q5M7Z0 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms