Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 AC093787.1-201ENST00000450396 207 ntBASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC144BQ3MJ40 Z98882.1-201ENST00000622160 2253 ntBASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 AC016405.3-201ENST00000607710 860 ntBASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC144BQ3MJ40 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.43
CCDC144BQ3MJ40 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.95■■□□□ 1.43
CCDC144BQ3MJ40 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC144BQ3MJ40 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 FEM1AP4-201ENST00000443167 1987 ntBASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 AL512625.2-201ENST00000417533 625 ntBASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 RNA5SP413-201ENST00000516373 109 ntBASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 AC069236.1-201ENST00000604339 616 ntBASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 AC008175.2-201ENST00000612840 297 ntBASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 AC120498.10-201ENST00000621827 505 ntBASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 AC008694.1-202ENST00000636953 945 ntBASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC144BQ3MJ40 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 POU5F1P3-201ENST00000428824 1078 ntBASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC144BQ3MJ40 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC144BQ3MJ40 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms