Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
CDH13P55290 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.2■□□□□ 0.83
CDH13P55290 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDH13P55290 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CDH13P55290 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDH13P55290 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CDH13P55290 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDH13P55290 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDH13P55290 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDH13P55290 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.2■□□□□ 0.82
CDH13P55290 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CDH13P55290 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDH13P55290 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CDH13P55290 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDH13P55290 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDH13P55290 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CDH13P55290 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDH13P55290 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH13P55290 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CDH13P55290 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH13P55290 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.19■□□□□ 0.82
CDH13P55290 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.19■□□□□ 0.82
CDH13P55290 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDH13P55290 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDH13P55290 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.19■□□□□ 0.82
CDH13P55290 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
CDH13P55290 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.19■□□□□ 0.82
CDH13P55290 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.19■□□□□ 0.82
CDH13P55290 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
CDH13P55290 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.19■□□□□ 0.82
CDH13P55290 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
CDH13P55290 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CDH13P55290 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.19■□□□□ 0.82
CDH13P55290 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDH13P55290 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
CDH13P55290 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH13P55290 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.18■□□□□ 0.82
CDH13P55290 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.18■□□□□ 0.82
CDH13P55290 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 AC079140.4-201ENST00000507448 529 ntBASIC20.18■□□□□ 0.82
CDH13P55290 AC005837.3-201ENST00000612163 286 ntBASIC20.18■□□□□ 0.82
CDH13P55290 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.18■□□□□ 0.82
CDH13P55290 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.18■□□□□ 0.82
CDH13P55290 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CDH13P55290 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
CDH13P55290 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDH13P55290 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.17■□□□□ 0.82
CDH13P55290 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
CDH13P55290 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CDH13P55290 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.17■□□□□ 0.82
CDH13P55290 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.17■□□□□ 0.82
CDH13P55290 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.17■□□□□ 0.82
CDH13P55290 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CDH13P55290 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CDH13P55290 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDH13P55290 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.16■□□□□ 0.82
CDH13P55290 AC011484.1-201ENST00000377652 1995 ntBASIC20.16■□□□□ 0.82
CDH13P55290 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.16■□□□□ 0.82
CDH13P55290 IRS3P-201ENST00000223076 1006 ntBASIC20.16■□□□□ 0.82
CDH13P55290 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CDH13P55290 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH13P55290 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.16■□□□□ 0.82
CDH13P55290 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH13P55290 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH13P55290 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDH13P55290 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CDH13P55290 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH13P55290 AC020907.5-201ENST00000624372 1936 ntBASIC20.15■□□□□ 0.82
CDH13P55290 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH13P55290 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH13P55290 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH13P55290 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CDH13P55290 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CDH13P55290 AC105265.2-201ENST00000467189 838 ntBASIC20.15■□□□□ 0.82
CDH13P55290 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.15■□□□□ 0.82
CDH13P55290 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.15■□□□□ 0.82
CDH13P55290 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms