Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGCS2P54868 TERT-206ENST00000508104 2486 ntTSL 5 BASIC24.02■■□□□ 1.44
HMGCS2P54868 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGCS2P54868 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
HMGCS2P54868 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
HMGCS2P54868 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGCS2P54868 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGCS2P54868 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC24.02■■□□□ 1.44
HMGCS2P54868 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC24.02■■□□□ 1.44
HMGCS2P54868 SPIB-206ENST00000596074 847 ntTSL 2 BASIC24.02■■□□□ 1.44
HMGCS2P54868 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
HMGCS2P54868 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
HMGCS2P54868 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGCS2P54868 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
HMGCS2P54868 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
HMGCS2P54868 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC24.01■■□□□ 1.43
HMGCS2P54868 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 MIR718-201ENST00000390190 70 ntBASIC24.01■■□□□ 1.43
HMGCS2P54868 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC24.01■■□□□ 1.43
HMGCS2P54868 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC24.01■■□□□ 1.43
HMGCS2P54868 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC24.01■■□□□ 1.43
HMGCS2P54868 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
HMGCS2P54868 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGCS2P54868 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 ME2-206ENST00000638410 2289 ntTSL 5 BASIC24■■□□□ 1.43
HMGCS2P54868 ME2-210ENST00000639255 2262 ntTSL 5 BASIC24■■□□□ 1.43
HMGCS2P54868 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
HMGCS2P54868 KLF2-202ENST00000592003 564 ntTSL 3 BASIC24■■□□□ 1.43
HMGCS2P54868 Z99916.2-201ENST00000604037 246 ntBASIC24■■□□□ 1.43
HMGCS2P54868 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24■■□□□ 1.43
HMGCS2P54868 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
HMGCS2P54868 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
HMGCS2P54868 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC24■■□□□ 1.43
HMGCS2P54868 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC24■■□□□ 1.43
HMGCS2P54868 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24■■□□□ 1.43
HMGCS2P54868 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGCS2P54868 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.99■■□□□ 1.43
HMGCS2P54868 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGCS2P54868 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
HMGCS2P54868 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC23.99■■□□□ 1.43
HMGCS2P54868 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGCS2P54868 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.99■■□□□ 1.43
HMGCS2P54868 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC23.99■■□□□ 1.43
HMGCS2P54868 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGCS2P54868 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGCS2P54868 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGCS2P54868 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.99■■□□□ 1.43
HMGCS2P54868 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.99■■□□□ 1.43
HMGCS2P54868 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.99■■□□□ 1.43
HMGCS2P54868 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGCS2P54868 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGCS2P54868 POM121L13P-201ENST00000422362 380 ntBASIC23.98■■□□□ 1.43
HMGCS2P54868 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC23.98■■□□□ 1.43
HMGCS2P54868 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGCS2P54868 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGCS2P54868 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGCS2P54868 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
HMGCS2P54868 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGCS2P54868 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGCS2P54868 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.97■■□□□ 1.43
HMGCS2P54868 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
HMGCS2P54868 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGCS2P54868 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.97■■□□□ 1.43
HMGCS2P54868 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGCS2P54868 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
HMGCS2P54868 C2orf69P4-201ENST00000565394 541 ntBASIC23.97■■□□□ 1.43
HMGCS2P54868 MIR4497-201ENST00000583208 89 ntBASIC23.97■■□□□ 1.43
HMGCS2P54868 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.97■■□□□ 1.43
HMGCS2P54868 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
HMGCS2P54868 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGCS2P54868 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGCS2P54868 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
HMGCS2P54868 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGCS2P54868 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGCS2P54868 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGCS2P54868 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
HMGCS2P54868 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC23.96■■□□□ 1.43
HMGCS2P54868 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC23.96■■□□□ 1.43
HMGCS2P54868 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms