Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN9P43378 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.53■■□□□ 1.04
PTPN9P43378 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN9P43378 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN9P43378 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN9P43378 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN9P43378 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN9P43378 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN9P43378 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN9P43378 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN9P43378 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.52■■□□□ 1.04
PTPN9P43378 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN9P43378 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.52■■□□□ 1.04
PTPN9P43378 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PTPN9P43378 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PTPN9P43378 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
PTPN9P43378 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PTPN9P43378 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.52■■□□□ 1.03
PTPN9P43378 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PTPN9P43378 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PTPN9P43378 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN9P43378 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.51■■□□□ 1.03
PTPN9P43378 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN9P43378 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN9P43378 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN9P43378 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.51■■□□□ 1.03
PTPN9P43378 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN9P43378 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN9P43378 AC007322.3-201ENST00000426526 701 ntBASIC21.51■■□□□ 1.03
PTPN9P43378 AL162412.1-201ENST00000567129 965 ntBASIC21.51■■□□□ 1.03
PTPN9P43378 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.51■■□□□ 1.03
PTPN9P43378 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN9P43378 AL591742.1-201ENST00000604433 565 ntBASIC21.51■■□□□ 1.03
PTPN9P43378 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PTPN9P43378 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN9P43378 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
PTPN9P43378 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.51■■□□□ 1.03
PTPN9P43378 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PTPN9P43378 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.5■■□□□ 1.03
PTPN9P43378 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PTPN9P43378 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.5■■□□□ 1.03
PTPN9P43378 CNN2P6-201ENST00000439038 900 ntBASIC21.5■■□□□ 1.03
PTPN9P43378 CDV3P1-201ENST00000471403 739 ntBASIC21.5■■□□□ 1.03
PTPN9P43378 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.5■■□□□ 1.03
PTPN9P43378 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.5■■□□□ 1.03
PTPN9P43378 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.5■■□□□ 1.03
PTPN9P43378 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PTPN9P43378 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PTPN9P43378 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN9P43378 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.49■■□□□ 1.03
PTPN9P43378 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN9P43378 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.49■■□□□ 1.03
PTPN9P43378 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN9P43378 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN9P43378 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN9P43378 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PTPN9P43378 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN9P43378 AC027702.1-201ENST00000563810 1770 ntBASIC21.49■■□□□ 1.03
PTPN9P43378 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN9P43378 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.49■■□□□ 1.03
PTPN9P43378 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.49■■□□□ 1.03
PTPN9P43378 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PTPN9P43378 IKBKGP1-201ENST00000612193 1073 ntBASIC21.49■■□□□ 1.03
PTPN9P43378 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.49■■□□□ 1.03
PTPN9P43378 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN9P43378 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PTPN9P43378 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
PTPN9P43378 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.48■■□□□ 1.03
PTPN9P43378 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.48■■□□□ 1.03
PTPN9P43378 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.48■■□□□ 1.03
PTPN9P43378 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
PTPN9P43378 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
PTPN9P43378 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PTPN9P43378 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.48■■□□□ 1.03
PTPN9P43378 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
PTPN9P43378 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.48■■□□□ 1.03
PTPN9P43378 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PTPN9P43378 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.48■■□□□ 1.03
PTPN9P43378 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.48■■□□□ 1.03
PTPN9P43378 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms