Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
BRCA1P38398 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
BRCA1P38398 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
BRCA1P38398 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
BRCA1P38398 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
BRCA1P38398 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC25.57■■□□□ 1.68
BRCA1P38398 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC25.57■■□□□ 1.68
BRCA1P38398 AC145285.6-201ENST00000604632 637 ntBASIC25.57■■□□□ 1.68
BRCA1P38398 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC25.57■■□□□ 1.68
BRCA1P38398 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
BRCA1P38398 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
BRCA1P38398 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
BRCA1P38398 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC25.57■■□□□ 1.68
BRCA1P38398 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
BRCA1P38398 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
BRCA1P38398 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
BRCA1P38398 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC25.56■■□□□ 1.68
BRCA1P38398 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC25.56■■□□□ 1.68
BRCA1P38398 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
BRCA1P38398 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
BRCA1P38398 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
BRCA1P38398 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC25.56■■□□□ 1.68
BRCA1P38398 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
BRCA1P38398 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.55■■□□□ 1.68
BRCA1P38398 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
BRCA1P38398 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC25.55■■□□□ 1.68
BRCA1P38398 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
BRCA1P38398 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
BRCA1P38398 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
BRCA1P38398 MOK-233ENST00000524214 1539 ntTSL 2 BASIC25.55■■□□□ 1.68
BRCA1P38398 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC25.55■■□□□ 1.68
BRCA1P38398 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
BRCA1P38398 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC25.55■■□□□ 1.68
BRCA1P38398 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
BRCA1P38398 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC25.55■■□□□ 1.68
BRCA1P38398 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
BRCA1P38398 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
BRCA1P38398 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
BRCA1P38398 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
BRCA1P38398 DUT-205ENST00000558813 769 ntTSL 2 BASIC25.54■■□□□ 1.68
BRCA1P38398 AC005829.2-201ENST00000571422 1056 ntBASIC25.54■■□□□ 1.68
BRCA1P38398 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC25.54■■□□□ 1.68
BRCA1P38398 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
BRCA1P38398 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
BRCA1P38398 NME3-204ENST00000563498 920 ntTSL 2 BASIC25.53■■□□□ 1.68
BRCA1P38398 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
BRCA1P38398 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC25.53■■□□□ 1.68
BRCA1P38398 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
BRCA1P38398 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC25.53■■□□□ 1.68
BRCA1P38398 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
BRCA1P38398 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
BRCA1P38398 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
BRCA1P38398 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
BRCA1P38398 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
BRCA1P38398 RER1-204ENST00000378518 522 ntTSL 3 BASIC25.53■■□□□ 1.68
BRCA1P38398 AC120498.8-201ENST00000614275 531 ntBASIC25.53■■□□□ 1.68
BRCA1P38398 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC25.53■■□□□ 1.68
BRCA1P38398 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC25.52■■□□□ 1.68
BRCA1P38398 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC25.52■■□□□ 1.68
BRCA1P38398 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC25.52■■□□□ 1.68
BRCA1P38398 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC25.52■■□□□ 1.68
BRCA1P38398 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC25.52■■□□□ 1.68
BRCA1P38398 THEM4-205ENST00000489410 643 ntTSL 2 BASIC25.52■■□□□ 1.68
BRCA1P38398 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC25.52■■□□□ 1.68
BRCA1P38398 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC25.52■■□□□ 1.68
BRCA1P38398 TPM1-226ENST00000560959 925 ntTSL 2 BASIC25.52■■□□□ 1.68
BRCA1P38398 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC25.52■■□□□ 1.68
BRCA1P38398 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
BRCA1P38398 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC25.51■■□□□ 1.67
BRCA1P38398 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
BRCA1P38398 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
BRCA1P38398 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC25.51■■□□□ 1.67
BRCA1P38398 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
BRCA1P38398 AC005521.1-201ENST00000393351 872 ntBASIC25.51■■□□□ 1.67
BRCA1P38398 KRT18P57-201ENST00000443599 1254 ntBASIC25.51■■□□□ 1.67
BRCA1P38398 Six3os1_6.1-201ENST00000620790 196 ntBASIC25.51■■□□□ 1.67
BRCA1P38398 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC25.5■■□□□ 1.67
BRCA1P38398 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
BRCA1P38398 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
BRCA1P38398 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
BRCA1P38398 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC25.5■■□□□ 1.67
BRCA1P38398 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
BRCA1P38398 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
BRCA1P38398 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC25.49■■□□□ 1.67
BRCA1P38398 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC25.49■■□□□ 1.67
BRCA1P38398 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC25.49■■□□□ 1.67
BRCA1P38398 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
BRCA1P38398 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
BRCA1P38398 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
BRCA1P38398 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC25.49■■□□□ 1.67
BRCA1P38398 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC25.49■■□□□ 1.67
BRCA1P38398 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
BRCA1P38398 ARMC10P1-201ENST00000313754 855 ntBASIC25.49■■□□□ 1.67
BRCA1P38398 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC25.49■■□□□ 1.67
BRCA1P38398 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC25.49■■□□□ 1.67
BRCA1P38398 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
BRCA1P38398 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC25.49■■□□□ 1.67
BRCA1P38398 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
BRCA1P38398 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC25.49■■□□□ 1.67
BRCA1P38398 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms