Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.38■□□□□ 0.53
LIMS3P0CW19 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMS3P0CW19 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
LIMS3P0CW19 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMS3P0CW19 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
LIMS3P0CW19 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.37■□□□□ 0.53
LIMS3P0CW19 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.37■□□□□ 0.53
LIMS3P0CW19 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
LIMS3P0CW19 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
LIMS3P0CW19 TCF3P1-201ENST00000423021 1937 ntBASIC18.37■□□□□ 0.53
LIMS3P0CW19 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.37■□□□□ 0.53
LIMS3P0CW19 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 SMG8-203ENST00000578922 2178 ntBASIC18.37■□□□□ 0.53
LIMS3P0CW19 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIMS3P0CW19 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMS3P0CW19 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMS3P0CW19 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMS3P0CW19 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMS3P0CW19 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMS3P0CW19 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMS3P0CW19 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LIMS3P0CW19 AC009237.3-201ENST00000393279 1427 ntBASIC18.36■□□□□ 0.53
LIMS3P0CW19 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
LIMS3P0CW19 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.36■□□□□ 0.53
LIMS3P0CW19 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.36■□□□□ 0.53
LIMS3P0CW19 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LIMS3P0CW19 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMS3P0CW19 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMS3P0CW19 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
LIMS3P0CW19 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
LIMS3P0CW19 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMS3P0CW19 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMS3P0CW19 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.35■□□□□ 0.53
LIMS3P0CW19 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIMS3P0CW19 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMS3P0CW19 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMS3P0CW19 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMS3P0CW19 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.34■□□□□ 0.53
LIMS3P0CW19 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMS3P0CW19 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMS3P0CW19 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMS3P0CW19 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMS3P0CW19 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMS3P0CW19 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIMS3P0CW19 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LIMS3P0CW19 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LIMS3P0CW19 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIMS3P0CW19 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMS3P0CW19 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMS3P0CW19 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMS3P0CW19 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.33■□□□□ 0.53
LIMS3P0CW19 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMS3P0CW19 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMS3P0CW19 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.33■□□□□ 0.53
LIMS3P0CW19 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMS3P0CW19 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
LIMS3P0CW19 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMS3P0CW19 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.33■□□□□ 0.53
LIMS3P0CW19 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMS3P0CW19 GUSBP5-201ENST00000418136 578 ntBASIC18.33■□□□□ 0.52
LIMS3P0CW19 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMS3P0CW19 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMS3P0CW19 MIR4466-201ENST00000606121 54 ntBASIC18.33■□□□□ 0.52
LIMS3P0CW19 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMS3P0CW19 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMS3P0CW19 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms