Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 MIPEPP3-201ENST00000412105 444 ntBASIC21.78■■□□□ 1.08
RTN3O95197 AC007322.3-201ENST00000426526 701 ntBASIC21.78■■□□□ 1.08
RTN3O95197 AC073210.2-201ENST00000430369 194 ntBASIC21.78■■□□□ 1.08
RTN3O95197 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.78■■□□□ 1.08
RTN3O95197 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.78■■□□□ 1.08
RTN3O95197 MIR4758-201ENST00000577688 71 ntBASIC21.78■■□□□ 1.08
RTN3O95197 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.78■■□□□ 1.08
RTN3O95197 AC133041.1-202ENST00000642053 222 ntBASIC21.78■■□□□ 1.08
RTN3O95197 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.78■■□□□ 1.08
RTN3O95197 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RTN3O95197 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.77■■□□□ 1.08
RTN3O95197 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTN3O95197 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTN3O95197 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RTN3O95197 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTN3O95197 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTN3O95197 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTN3O95197 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTN3O95197 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.77■■□□□ 1.08
RTN3O95197 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
RTN3O95197 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.77■■□□□ 1.08
RTN3O95197 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RTN3O95197 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.77■■□□□ 1.08
RTN3O95197 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
RTN3O95197 AC010980.2-201ENST00000587099 1412 ntBASIC21.77■■□□□ 1.08
RTN3O95197 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
RTN3O95197 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
RTN3O95197 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.77■■□□□ 1.08
RTN3O95197 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.77■■□□□ 1.08
RTN3O95197 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RTN3O95197 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
RTN3O95197 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.07
RTN3O95197 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
RTN3O95197 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.76■■□□□ 1.07
RTN3O95197 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.76■■□□□ 1.07
RTN3O95197 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
RTN3O95197 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
RTN3O95197 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 AC069152.1-201ENST00000438030 544 ntBASIC21.76■■□□□ 1.07
RTN3O95197 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.76■■□□□ 1.07
RTN3O95197 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.76■■□□□ 1.07
RTN3O95197 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.76■■□□□ 1.07
RTN3O95197 AC100791.3-201ENST00000617619 330 ntBASIC21.76■■□□□ 1.07
RTN3O95197 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
RTN3O95197 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
RTN3O95197 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 AC092667.1-201ENST00000434301 2586 ntBASIC21.76■■□□□ 1.07
RTN3O95197 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RTN3O95197 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.76■■□□□ 1.07
RTN3O95197 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
RTN3O95197 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
RTN3O95197 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.75■■□□□ 1.07
RTN3O95197 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.75■■□□□ 1.07
RTN3O95197 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RTN3O95197 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.75■■□□□ 1.07
RTN3O95197 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.75■■□□□ 1.07
RTN3O95197 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
RTN3O95197 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 FBXW4P1-201ENST00000426721 2239 ntBASIC21.75■■□□□ 1.07
RTN3O95197 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RTN3O95197 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.74■■□□□ 1.07
RTN3O95197 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RTN3O95197 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RTN3O95197 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.74■■□□□ 1.07
RTN3O95197 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RTN3O95197 BX276092.2-201ENST00000417668 665 ntBASIC21.74■■□□□ 1.07
RTN3O95197 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.74■■□□□ 1.07
RTN3O95197 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.74■■□□□ 1.07
RTN3O95197 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.74■■□□□ 1.07
RTN3O95197 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RTN3O95197 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RTN3O95197 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
RTN3O95197 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms