Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
AP4E1Q9UPM8 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
AP4E1Q9UPM8 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
AP4E1Q9UPM8 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
AP4E1Q9UPM8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.52■■□□□ 1.03
AP4E1Q9UPM8 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.03
AP4E1Q9UPM8 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 RBM17P2-201ENST00000616397 1405 ntBASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
AP4E1Q9UPM8 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 AC006128.1-201ENST00000624704 1661 ntBASIC21.5■■□□□ 1.03
AP4E1Q9UPM8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 AC243732.1-201ENST00000612648 864 ntBASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.49■■□□□ 1.03
AP4E1Q9UPM8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 AC011484.1-201ENST00000377652 1995 ntBASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.48■■□□□ 1.03
AP4E1Q9UPM8 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 AC016769.1-201ENST00000409132 1010 ntBASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 KRT18P11-201ENST00000435214 1283 ntBASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
AP4E1Q9UPM8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
AP4E1Q9UPM8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms