Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 LTBP4-220ENST00000598166 699 ntTSL 518.49■□□□□ 0.559e-14■■■□□ 15.1
DDX55Q8NHQ9 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.69■□□□□ 0.261e-8■■■□□ 15.1
DDX55Q8NHQ9 KIF21A-207ENST00000547733 3535 ntTSL 26.81□□□□□ -1.321e-8■■■□□ 15.1
DDX55Q8NHQ9 KIF21A-210ENST00000551264 3161 ntTSL 26.02□□□□□ -1.451e-8■■■□□ 15.1
DDX55Q8NHQ9 KIF21A-213ENST00000552961 4120 ntTSL 1 (best)5.11□□□□□ -1.591e-8■■■□□ 15.1
DDX55Q8NHQ9 KIF21A-214ENST00000636569 6157 ntTSL 53.93□□□□□ -1.781e-8■■■□□ 15.1
DDX55Q8NHQ9 AES-211ENST00000592330 275 ntTSL 54.3□□□□□ -1.728e-21■■■□□ 15.1
DDX55Q8NHQ9 SRPK1-201ENST00000346162 4762 ntTSL 217.07■□□□□ 0.326e-8■■■□□ 15.1
DDX55Q8NHQ9 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.326e-8■■■□□ 15.1
DDX55Q8NHQ9 SRPK1-202ENST00000361690 4286 ntTSL 1 (best)11.27□□□□□ -0.616e-8■■■□□ 15.1
DDX55Q8NHQ9 SRPK1-205ENST00000423325 4357 ntTSL 2 BASIC10.52□□□□□ -0.726e-8■■■□□ 15.1
DDX55Q8NHQ9 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC14.09□□□□□ -0.151e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-202ENST00000336916 8435 ntTSL 1 (best) BASIC13.49□□□□□ -0.251e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-206ENST00000359671 8524 ntTSL 5 BASIC13.27□□□□□ -0.281e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-212ENST00000446046 7952 ntTSL 1 (best) BASIC12.73□□□□□ -0.371e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-207ENST00000421182 8103 ntTSL 1 (best) BASIC12.1□□□□□ -0.471e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-211ENST00000443816 7762 ntTSL 1 (best) BASIC12.1□□□□□ -0.471e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-204ENST00000356005 7846 ntTSL 1 (best) BASIC12.08□□□□□ -0.481e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-203ENST00000354785 8905 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.521e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-205ENST00000357867 7898 ntTSL 1 (best) BASIC11.76□□□□□ -0.531e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-209ENST00000432072 7759 ntTSL 1 (best) BASIC10.51□□□□□ -0.731e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-227ENST00000498719 2433 ntTSL 29.15□□□□□ -0.941e-323■■■□□ 15.1
DDX55Q8NHQ9 FN1-224ENST00000492816 9171 ntTSL 55.75□□□□□ -1.491e-323■■■□□ 15.1
DDX55Q8NHQ9 RBM39-212ENST00000429968 2149 ntTSL 215.11■□□□□ 0.015e-11■■■□□ 15.1
DDX55Q8NHQ9 RBM39-216ENST00000444878 2124 ntTSL 215□□□□□ -0.015e-11■■■□□ 15.1
DDX55Q8NHQ9 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC14.6□□□□□ -0.075e-11■■■□□ 15.1
DDX55Q8NHQ9 RBM39-230ENST00000476806 754 ntTSL 58.77□□□□□ -1.015e-11■■■□□ 15.1
DDX55Q8NHQ9 RBM39-233ENST00000482563 1737 ntTSL 28.09□□□□□ -1.115e-11■■■□□ 15.1
DDX55Q8NHQ9 RBM39-237ENST00000492779 2316 ntTSL 27.36□□□□□ -1.235e-11■■■□□ 15.1
DDX55Q8NHQ9 RBM39-241ENST00000496183 632 ntTSL 26.26□□□□□ -1.415e-11■■■□□ 15.1
DDX55Q8NHQ9 RBM39-240ENST00000495293 759 ntTSL 25.3□□□□□ -1.565e-11■■■□□ 15.1
DDX55Q8NHQ9 RBM39-235ENST00000490354 436 ntTSL 25.15□□□□□ -1.595e-11■■■□□ 15.1
DDX55Q8NHQ9 LTBP4-229ENST00000601032 2019 ntTSL 1 (best)17.94■□□□□ 0.466e-7■■■□□ 15.1
DDX55Q8NHQ9 CFL1-213ENST00000532134 855 ntTSL 516.04■□□□□ 0.162e-25■■■□□ 15.1
DDX55Q8NHQ9 SRC-207ENST00000477066 3300 ntTSL 212.67□□□□□ -0.384e-25■■■□□ 15.1
DDX55Q8NHQ9 TMEM2-204ENST00000377057 2637 ntTSL 210.43□□□□□ -0.741e-6■■■□□ 15.1
DDX55Q8NHQ9 SNHG19-201ENST00000563192 342 ntTSL 2 BASIC9.74□□□□□ -0.857e-8■■■□□ 15.1
DDX55Q8NHQ9 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.112e-9■■■□□ 15.1
DDX55Q8NHQ9 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.032e-9■■■□□ 15.1
DDX55Q8NHQ9 SAT1-203ENST00000379254 868 ntTSL 3 BASIC16.85■□□□□ 0.296e-71■■■□□ 15.1
DDX55Q8NHQ9 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.296e-71■■■□□ 15.1
DDX55Q8NHQ9 SAT1-209ENST00000489394 1135 ntTSL 213.81□□□□□ -0.26e-71■■■□□ 15.1
DDX55Q8NHQ9 SAT1-207ENST00000474223 1033 ntTSL 27.44□□□□□ -1.226e-71■■■□□ 15.1
DDX55Q8NHQ9 SAT1-206ENST00000463236 735 ntTSL 37.42□□□□□ -1.226e-71■■■□□ 15.1
DDX55Q8NHQ9 SAT1-205ENST00000462639 826 ntTSL 25.02□□□□□ -1.616e-71■■■□□ 15.1
DDX55Q8NHQ9 POR-212ENST00000447222 2332 ntTSL 517.05■□□□□ 0.322e-9■■■□□ 15
DDX55Q8NHQ9 POR-202ENST00000412064 1044 ntTSL 516.55■□□□□ 0.242e-9■■■□□ 15
DDX55Q8NHQ9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.593e-6■■■□□ 15
DDX55Q8NHQ9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.553e-6■■■□□ 15
DDX55Q8NHQ9 KDM1A-206ENST00000602503 2810 nt8.44□□□□□ -1.063e-6■■■□□ 15
DDX55Q8NHQ9 ST13-201ENST00000216218 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.513e-7■■■□□ 15
DDX55Q8NHQ9 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.552e-7■■■□□ 15
DDX55Q8NHQ9 AC118553.2-208ENST00000640357 3488 ntTSL 514.46□□□□□ -0.092e-7■■■□□ 15
DDX55Q8NHQ9 AC118553.2-206ENST00000639171 5352 ntTSL 511.73□□□□□ -0.532e-7■■■□□ 15
DDX55Q8NHQ9 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.638e-8■■■□□ 15
DDX55Q8NHQ9 RFLNA-203ENST00000389727 2385 ntAPPRIS P2 TSL 522.06■■□□□ 1.123e-9■■■□□ 15
DDX55Q8NHQ9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.113e-9■■■□□ 15
DDX55Q8NHQ9 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.453e-9■■■□□ 15
DDX55Q8NHQ9 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.053e-9■■■□□ 15
DDX55Q8NHQ9 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.053e-9■■■□□ 15
DDX55Q8NHQ9 RFLNA-204ENST00000545615 449 ntTSL 314.4□□□□□ -0.13e-9■■■□□ 15
DDX55Q8NHQ9 ZNF664-201ENST00000337815 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.573e-9■■■□□ 15
DDX55Q8NHQ9 LGALS1-205ENST00000472321 546 ntTSL 223.13■■□□□ 1.292e-11■■■□□ 15
DDX55Q8NHQ9 LGALS1-202ENST00000425542 637 ntTSL 322.95■■□□□ 1.262e-11■■■□□ 15
DDX55Q8NHQ9 LGALS1-207ENST00000489315 516 ntTSL 322.95■■□□□ 1.262e-11■■■□□ 15
DDX55Q8NHQ9 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.162e-11■■■□□ 15
DDX55Q8NHQ9 LGALS1-203ENST00000454173 331 ntTSL 518.7■□□□□ 0.582e-11■■■□□ 15
DDX55Q8NHQ9 PDAP1-204ENST00000496335 302 ntTSL 317.74■□□□□ 0.436e-18■■■□□ 15
DDX55Q8NHQ9 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.158e-7■■■□□ 15
DDX55Q8NHQ9 AKR1B1-203ENST00000434222 1852 ntTSL 515.02■□□□□ -08e-7■■■□□ 15
DDX55Q8NHQ9 AKR1B1-205ENST00000465351 1930 ntTSL 1 (best)13.54□□□□□ -0.248e-7■■■□□ 15
DDX55Q8NHQ9 COX7A2-203ENST00000377978 366 ntTSL 56.6□□□□□ -1.351e-10■■■□□ 15
DDX55Q8NHQ9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC33.05■■■□□ 2.881e-7■■■□□ 15
DDX55Q8NHQ9 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.111e-7■■■□□ 15
DDX55Q8NHQ9 SEC61G-202ENST00000395535 459 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.891e-7■■■□□ 15
DDX55Q8NHQ9 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.971e-7■■■□□ 15
DDX55Q8NHQ9 PRRC2B-208ENST00000465931 5366 ntTSL 213.15□□□□□ -0.38e-8■■■□□ 15
DDX55Q8NHQ9 PRRC2B-201ENST00000320547 4950 ntTSL 212.92□□□□□ -0.348e-8■■■□□ 15
DDX55Q8NHQ9 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.428e-8■■■□□ 15
DDX55Q8NHQ9 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC11.97□□□□□ -0.498e-8■■■□□ 15
DDX55Q8NHQ9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.194e-8■■■□□ 14.9
DDX55Q8NHQ9 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.192e-7■■■□□ 14.9
DDX55Q8NHQ9 NMT1-210ENST00000590310 704 ntTSL 221.14■□□□□ 0.972e-10■■■□□ 14.9
DDX55Q8NHQ9 NMT1-213ENST00000592782 4999 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.352e-10■■■□□ 14.9
DDX55Q8NHQ9 NAMPT-201ENST00000222553 4582 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.418e-16■■■□□ 14.9
DDX55Q8NHQ9 NMT1-201ENST00000258960 4879 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.672e-10■■■□□ 14.9
DDX55Q8NHQ9 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.462e-10■■■□□ 14.9
DDX55Q8NHQ9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.382e-7■■■□□ 14.9
DDX55Q8NHQ9 KLF16-202ENST00000541015 1134 ntTSL 1 (best)27.58■■■□□ 2.012e-7■■■□□ 14.9
DDX55Q8NHQ9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.882e-7■■■□□ 14.9
DDX55Q8NHQ9 AARS-201ENST00000261772 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.477e-14■■■□□ 14.9
DDX55Q8NHQ9 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.598e-9■■■□□ 14.9
DDX55Q8NHQ9 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.328e-9■■■□□ 14.9
DDX55Q8NHQ9 BRD2-212ENST00000482914 4834 ntTSL 1 (best)15.06■□□□□ 08e-9■■■□□ 14.9
DDX55Q8NHQ9 BRD2-205ENST00000449085 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.358e-9■■■□□ 14.9
DDX55Q8NHQ9 BRD2-204ENST00000449025 3210 ntAPPRIS ALT2 TSL 1 (best)12.86□□□□□ -0.358e-9■■■□□ 14.9
DDX55Q8NHQ9 BRD2-203ENST00000395287 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.788e-9■■■□□ 14.9
DDX55Q8NHQ9 GPX3-207ENST00000521650 467 ntTSL 216.08■□□□□ 0.163e-16■■■□□ 14.9
DDX55Q8NHQ9 RBM39-245ENST00000639702 5914 ntTSL 513.41□□□□□ -0.263e-8■■■□□ 14.9
DDX55Q8NHQ9 RBM39-203ENST00000361162 2831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.373e-8■■■□□ 14.9
Retrieved 100 of 15,504 protein–RNA pairs in 130 ms