Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC28AQ8IWP9 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 AC018755.3-202ENST00000596210 929 ntBASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC28AQ8IWP9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 AC009831.1-201ENST00000580420 1582 ntBASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC28AQ8IWP9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC28AQ8IWP9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 ME2-216ENST00000639850 2331 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 BCL2-203ENST00000589955 5011 ntBASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 HCG11-201ENST00000411553 5696 ntBASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC28AQ8IWP9 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC28AQ8IWP9 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 AC093503.3-201ENST00000624917 2352 ntBASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 AL022069.1-201ENST00000568025 1636 ntBASIC17.23■□□□□ 0.35
CCDC28AQ8IWP9 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms