Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CLTCL1P53675 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CLTCL1P53675 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC29.96■■■□□ 2.39
CLTCL1P53675 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
CLTCL1P53675 KRT18P68-201ENST00000392293 1000 ntBASIC29.96■■■□□ 2.39
CLTCL1P53675 RNF121-214ENST00000533380 870 ntTSL 3 BASIC29.96■■■□□ 2.39
CLTCL1P53675 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC29.96■■■□□ 2.39
CLTCL1P53675 GUSBP5-202ENST00000510805 1989 ntBASIC29.96■■■□□ 2.39
CLTCL1P53675 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC29.96■■■□□ 2.39
CLTCL1P53675 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
CLTCL1P53675 AC116050.2-201ENST00000612102 1779 ntBASIC29.95■■■□□ 2.38
CLTCL1P53675 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC29.95■■■□□ 2.38
CLTCL1P53675 AL596275.1-201ENST00000423464 877 ntBASIC29.95■■■□□ 2.38
CLTCL1P53675 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC29.95■■■□□ 2.38
CLTCL1P53675 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC29.95■■■□□ 2.38
CLTCL1P53675 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
CLTCL1P53675 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC29.95■■■□□ 2.38
CLTCL1P53675 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
CLTCL1P53675 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC29.95■■■□□ 2.38
CLTCL1P53675 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC29.95■■■□□ 2.38
CLTCL1P53675 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC29.95■■■□□ 2.38
CLTCL1P53675 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC29.94■■■□□ 2.38
CLTCL1P53675 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC29.94■■■□□ 2.38
CLTCL1P53675 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CLTCL1P53675 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC29.94■■■□□ 2.38
CLTCL1P53675 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC29.94■■■□□ 2.38
CLTCL1P53675 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CLTCL1P53675 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC29.94■■■□□ 2.38
CLTCL1P53675 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CLTCL1P53675 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC29.94■■■□□ 2.38
CLTCL1P53675 ME2-206ENST00000638410 2289 ntTSL 5 BASIC29.94■■■□□ 2.38
CLTCL1P53675 ME2-210ENST00000639255 2262 ntTSL 5 BASIC29.94■■■□□ 2.38
CLTCL1P53675 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CLTCL1P53675 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC29.94■■■□□ 2.38
CLTCL1P53675 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CLTCL1P53675 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC29.94■■■□□ 2.38
CLTCL1P53675 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC29.93■■■□□ 2.38
CLTCL1P53675 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC29.93■■■□□ 2.38
CLTCL1P53675 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC29.93■■■□□ 2.38
CLTCL1P53675 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC29.93■■■□□ 2.38
CLTCL1P53675 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CLTCL1P53675 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC29.93■■■□□ 2.38
CLTCL1P53675 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
CLTCL1P53675 PEX7-202ENST00000367756 680 ntTSL 3 BASIC29.93■■■□□ 2.38
CLTCL1P53675 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CLTCL1P53675 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
CLTCL1P53675 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
CLTCL1P53675 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC29.93■■■□□ 2.38
CLTCL1P53675 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
CLTCL1P53675 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC29.92■■■□□ 2.38
CLTCL1P53675 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC29.92■■■□□ 2.38
CLTCL1P53675 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
CLTCL1P53675 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
CLTCL1P53675 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
CLTCL1P53675 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
CLTCL1P53675 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC29.92■■■□□ 2.38
CLTCL1P53675 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC29.92■■■□□ 2.38
CLTCL1P53675 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC29.92■■■□□ 2.38
CLTCL1P53675 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC29.92■■■□□ 2.38
CLTCL1P53675 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CLTCL1P53675 MFF-203ENST00000349901 1716 ntTSL 2 BASIC29.91■■■□□ 2.38
CLTCL1P53675 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
CLTCL1P53675 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CLTCL1P53675 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC29.91■■■□□ 2.38
CLTCL1P53675 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CLTCL1P53675 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CLTCL1P53675 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC29.91■■■□□ 2.38
CLTCL1P53675 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
CLTCL1P53675 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CLTCL1P53675 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CLTCL1P53675 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
CLTCL1P53675 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC29.9■■■□□ 2.38
CLTCL1P53675 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CLTCL1P53675 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC29.9■■■□□ 2.38
CLTCL1P53675 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CLTCL1P53675 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC29.9■■■□□ 2.38
CLTCL1P53675 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CLTCL1P53675 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC29.9■■■□□ 2.38
CLTCL1P53675 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC29.89■■■□□ 2.38
CLTCL1P53675 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
CLTCL1P53675 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
CLTCL1P53675 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC29.89■■■□□ 2.38
CLTCL1P53675 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
CLTCL1P53675 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC29.89■■■□□ 2.38
CLTCL1P53675 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC29.89■■■□□ 2.38
CLTCL1P53675 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC29.89■■■□□ 2.38
CLTCL1P53675 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC29.89■■■□□ 2.38
CLTCL1P53675 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC29.89■■■□□ 2.37
CLTCL1P53675 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.37
CLTCL1P53675 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC29.89■■■□□ 2.37
CLTCL1P53675 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC29.89■■■□□ 2.37
CLTCL1P53675 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CLTCL1P53675 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
CLTCL1P53675 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC29.88■■■□□ 2.37
CLTCL1P53675 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CLTCL1P53675 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC29.88■■■□□ 2.37
CLTCL1P53675 EXOC3-AS1-202ENST00000623673 1663 ntBASIC29.88■■■□□ 2.37
CLTCL1P53675 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC29.88■■■□□ 2.37
CLTCL1P53675 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC29.88■■■□□ 2.37
CLTCL1P53675 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC29.87■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms